24 Oct
2014
24 Oct
'14
12:49 a.m.
Using MSNoise 1.24 there are two python scripts that plot; they are
07plot_dtt.py and s07plot_dtt.py. I get errors for either.
Using s07plot_dtt.py yields attachment s07plot_dtt.png. There are two
problems:
1) I entered mov_stack values 1,3,5, and 10 days into the configurator but
the graphical output includes only 1, 3, and 5 days moving window graphs,
and the only graph with any data plotted onto it is the 5 days moving
window.
2) the graph x axes automatically include a much larger time period than
covered by the data plotted. This includes dates back to 2013 and forward
into 2016, while all the data I have is from 2014. I am unsure if this
problem is related to some of my settings in the configurator. My settings
that I can see might be related are: enddate=2100-01-01, ref_begin=-100,
ref_end=0, startdate=2014-05-04.
Using 07plot_dtt.py yields attachment image 07.plot_dtt.png the following:
>>
runfile('/home/devora/MSNoise-master/07.plot_dtt.py',
wdir=r'/home/devora/MSNoise-master')
UMD has deleted: database_tools, msnoise_table_def
loading 1 days
loading 3 days
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"/usr/lib/python2.7/site-packages/spyderlib/widgets/externalshell/sitecustomize.py",
line 540, in runfile
execfile(filename, namespace)
File "/home/devora/MSNoise-master/07.plot_dtt.py", line 128, in <module>
plt.fill_between(ALL.index,ALL[dttname]-ALL[errname],ALL[dttname]+ALL[errname],lw=1,color='red',zorder=-1,alpha=0.3)
File "/usr/lib64/python2.7/site-packages/matplotlib/pyplot.py", line 2757,
in fill_between
interpolate=interpolate, **kwargs)
File "/usr/lib64/python2.7/site-packages/matplotlib/axes.py", line 6988, in
fill_between
x = ma.masked_invalid(self.convert_xunits(x))
File "/usr/lib64/python2.7/site-packages/numpy/ma/core.py", line 2239, in
masked_invalid
condition = ~(np.isfinite(a))
TypeError: ufunc 'isfinite' not supported for the input types, and the
inputs could not be safely coerced to any supported types according to the
casting rule ''safe''
>>
Has anyone else encountered these problems before? Does anyone have any
suggestions for what I might do to overcome them?
Thankyou
Josiah
30 Oct
30 Oct
4:03 p.m.
New subject: plots
Hi Josiah,
your email was blocked because it contained no subject...
Could you test using 1.2.5 ? you just have to replace the python files
in the directory and all should work exactly the same...
Thomas
Le 24/10/2014 00:49, Josiah Ensing a écrit :
Using MSNoise 1.24 there are two python scripts that
plot; they are
07plot_dtt.py and s07plot_dtt.py. I get errors for either.
Using s07plot_dtt.py yields attachment s07plot_dtt.png. There are two
problems:
1) I entered mov_stack values 1,3,5, and 10 days into the configurator but
the graphical output includes only 1, 3, and 5 days moving window graphs,
and the only graph with any data plotted onto it is the 5 days moving
window.
2) the graph x axes automatically include a much larger time period than
covered by the data plotted. This includes dates back to 2013 and forward
into 2016, while all the data I have is from 2014. I am unsure if this
problem is related to some of my settings in the configurator. My settings
that I can see might be related are: enddate=2100-01-01, ref_begin=-100,
ref_end=0, startdate=2014-05-04.
Using 07plot_dtt.py yields attachment image 07.plot_dtt.png the following:
>>
runfile('/home/devora/MSNoise-master/07.plot_dtt.py',
wdir=r'/home/devora/MSNoise-master')
UMD has deleted: database_tools, msnoise_table_def
loading 1 days
loading 3 days
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"/usr/lib/python2.7/site-packages/spyderlib/widgets/externalshell/sitecustomize.py",
line 540, in runfile
execfile(filename, namespace)
File "/home/devora/MSNoise-master/07.plot_dtt.py", line 128, in <module>
plt.fill_between(ALL.index,ALL[dttname]-ALL[errname],ALL[dttname]+ALL[errname],lw=1,color='red',zorder=-1,alpha=0.3)
File "/usr/lib64/python2.7/site-packages/matplotlib/pyplot.py", line 2757,
in fill_between
interpolate=interpolate, **kwargs)
File "/usr/lib64/python2.7/site-packages/matplotlib/axes.py", line 6988, in
fill_between
x = ma.masked_invalid(self.convert_xunits(x))
File "/usr/lib64/python2.7/site-packages/numpy/ma/core.py", line 2239, in
masked_invalid
condition = ~(np.isfinite(a))
TypeError: ufunc 'isfinite' not supported for the input types, and the
inputs could not be safely coerced to any supported types according to the
casting rule ''safe''
Has anyone else encountered these problems before? Does anyone have any
suggestions for what I might do to overcome them?
Thankyou
Josiah
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http://mailman-as.oma.be/mailman/listinfo/msnoise 
31 Oct
31 Oct
12:35 a.m.
New subject: plots
Thank you. When I used MSNoise 1.2.5, the second issue I wrote about
(mismatching x axis) is not a problem anymore. The first issue, is still a
problem. But this time the 10days , moving window plot is plotted, and the
1 and 3 days moving windows a re plotted, but not for the full time scale,
and the 5 days moving window is blank.
2014-10-31 4:03 GMT+13:00 Thomas Lecocq <thomas.lecocq(a)oma.be>be>:
Hi Josiah,
your email was blocked because it contained no subject...
Could you test using 1.2.5 ? you just have to replace the python files in
the directory and all should work exactly the same...
Thomas
Le 24/10/2014 00:49, Josiah Ensing a écrit :
--
Josiah Ensing
Using MSNoise 1.24 there are two python scripts
that plot; they are
07plot_dtt.py and s07plot_dtt.py. I get errors for either.
Using s07plot_dtt.py yields attachment s07plot_dtt.png. There are two
problems:
1) I entered mov_stack values 1,3,5, and 10 days into the configurator
but
the graphical output includes only 1, 3, and 5 days moving window graphs,
and the only graph with any data plotted onto it is the 5 days moving
window.
2) the graph x axes automatically include a much larger time period than
covered by the data plotted. This includes dates back to 2013 and forward
into 2016, while all the data I have is from 2014. I am unsure if this
problem is related to some of my settings in the configurator. My settings
that I can see might be related are: enddate=2100-01-01, ref_begin=-100,
ref_end=0, startdate=2014-05-04.
Using 07plot_dtt.py yields attachment image 07.plot_dtt.png the
following:
runfile('/home/devora/MSNoise-master/07.plot_dtt.py',
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
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>>
> wdir=r'/home/devora/MSNoise-master')
UMD has deleted: database_tools, msnoise_table_def
loading 1 days
loading 3 days
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"/usr/lib/python2.7/site-packages/spyderlib/widgets/
externalshell/sitecustomize.py",
line 540, in runfile
execfile(filename, namespace)
File "/home/devora/MSNoise-master/07.plot_dtt.py", line 128, in <module>
plt.fill_between(ALL.index,ALL[dttname]-ALL[errname],ALL[
dttname]+ALL[errname],lw=1,color='red',zorder=-1,alpha=0.3)
File "/usr/lib64/python2.7/site-packages/matplotlib/pyplot.py", line
2757,
in fill_between
interpolate=interpolate, **kwargs)
File "/usr/lib64/python2.7/site-packages/matplotlib/axes.py", line 6988,
in
fill_between
x = ma.masked_invalid(self.convert_xunits(x))
File "/usr/lib64/python2.7/site-packages/numpy/ma/core.py", line 2239, in
masked_invalid
condition = ~(np.isfinite(a))
TypeError: ufunc 'isfinite' not supported for the input types, and the
inputs could not be safely coerced to any supported types according to the
casting rule ''safe''
Has anyone else encountered these problems before? Does anyone have any
suggestions for what I might do to overcome them?
Thankyou
Josiah
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
11 Nov
11 Nov
1:11 p.m.
New subject: plots
Josiah,
A possible reason for "missing" data in the final output would be that
either the dt/t computation did not manage to select enough reliable
points for computing the weighted linear regression, an thus dt/t is not
calculated for this/these dates. You can check in the DTT folder if all
daily files are present.
Thomas
Le 31/10/2014 00:35, Josiah Ensing a écrit :
Thank you. When I used MSNoise 1.2.5, the second issue
I wrote about
(mismatching x axis) is not a problem anymore. The first issue, is still a
problem. But this time the 10days , moving window plot is plotted, and the
1 and 3 days moving windows a re plotted, but not for the full time scale,
and the 5 days moving window is blank.
2014-10-31 4:03 GMT+13:00 Thomas Lecocq <thomas.lecocq(a)oma.be>be>:
Hi Josiah,
your email was blocked because it contained no subject...
Could you test using 1.2.5 ? you just have to replace the python files in
the directory and all should work exactly the same...
Thomas
Le 24/10/2014 00:49, Josiah Ensing a écrit :
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise Using MSNoise 1.24 there are two python scripts
that plot; they are
07plot_dtt.py and s07plot_dtt.py. I get errors for either.
Using s07plot_dtt.py yields attachment s07plot_dtt.png. There are two
problems:
1) I entered mov_stack values 1,3,5, and 10 days into the configurator
but
the graphical output includes only 1, 3, and 5 days moving window graphs,
and the only graph with any data plotted onto it is the 5 days moving
window.
2) the graph x axes automatically include a much larger time period than
covered by the data plotted. This includes dates back to 2013 and forward
into 2016, while all the data I have is from 2014. I am unsure if this
problem is related to some of my settings in the configurator. My settings
that I can see might be related are: enddate=2100-01-01, ref_begin=-100,
ref_end=0, startdate=2014-05-04.
Using 07plot_dtt.py yields attachment image 07.plot_dtt.png the
following:
runfile('/home/devora/MSNoise-master/07.plot_dtt.py',
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
>
wdir=r'/home/devora/MSNoise-master')
UMD has deleted: database_tools,
msnoise_table_def
loading 1 days
loading 3 days
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"/usr/lib/python2.7/site-packages/spyderlib/widgets/
externalshell/sitecustomize.py",
line 540, in runfile
execfile(filename, namespace)
File "/home/devora/MSNoise-master/07.plot_dtt.py", line 128, in <module>
plt.fill_between(ALL.index,ALL[dttname]-ALL[errname],ALL[
dttname]+ALL[errname],lw=1,color='red',zorder=-1,alpha=0.3)
File "/usr/lib64/python2.7/site-packages/matplotlib/pyplot.py", line
2757,
in fill_between
interpolate=interpolate, **kwargs)
File "/usr/lib64/python2.7/site-packages/matplotlib/axes.py", line 6988,
in
fill_between
x = ma.masked_invalid(self.convert_xunits(x))
File "/usr/lib64/python2.7/site-packages/numpy/ma/core.py", line 2239, in
masked_invalid
condition = ~(np.isfinite(a))
TypeError: ufunc 'isfinite' not supported for the input types, and the
inputs could not be safely coerced to any supported types according to the
casting rule ''safe''
Has anyone else encountered these problems before? Does anyone have any
suggestions for what I might do to overcome them?
Thankyou
Josiah
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
4048
days inactive
4067
days old
3 comments
4 participants
participants (4)
-
Josiah Ensing -
Josiah Ensing -
Thomas Lecocq -
Thomas Lecocq