23 Mar
2017
23 Mar
'17
4:19 a.m.
Hi, Thomas
Sorry to reply so late.
I tried to uninstall numpy and use conda to install again, it seems no problem.
But I tried again to run compute_cc command, some error occurs again.
The bug report shows:
Process Process-1:
Traceback (most recent call last):
File "/public/software/anaconda3/lib/python3.5/multiprocessing/process.py",
line 249, in _bootstrap
self.run()
File "/public/software/anaconda3/lib/python3.5/multiprocessing/process.py",
line 93, in run
self._target(*self._args, **self._kwargs)
File
"/public/software/anaconda3/lib/python3.5/site-packages/msnoise/s03compute_cc.py",
line 653, in main
trame2h[i]*cp, Nfft, dt, low, high, plot=False)
File
"/public/software/anaconda3/lib/python3.5/site-packages/msnoise/whiten.py", line
39, in whiten
freqVec = scipy.fftpack.fftfreq(Nfft,d=delta)[:Nfft/2]
TypeError: slice indices must be integers or None or have an __index__ method
Maybe it's because I set the wrong filter? But I do not know how to correct it.
Best Wishes,
Shuye Huang
-----原始邮件-----
发件人: "Thomas Lecocq" <thomas.lecocq(a)oma.be>
发送时间: 2017-03-20 16:08:31 (星期一)
收件人: msnoise(a)mailman-as.oma.be
抄送:
主题: [SPAM] Re: [MSNoise] Error when computing_cc
Hi Shuye,
Never seen this error, it is indeed something wrong with numpy. It looks
like numpy and its dependencies haven't been installed the same way (or
installed at all). you could remove numpy (pip uninstall numpy) and,
assuming you are using anaconda, use "conda install numpy"
Thomas
Le 20/03/2017 à 08:17, hsy119(a)mail.ustc.edu.cn a écrit :
Hi, Thomas and users
I just got an error when I tried to run compute_cc command. It shows:
[hsy119@yhjs3 msnoise_my]$ msnoise compute_cc
2017-03-20 15:18:30 [INFO] *** Starting: Compute CC ***
2017-03-20 15:18:30 [INFO] Will compute ZZ RR TT TR RT ZR RZ TZ ZT
2017-03-20 15:18:30 [INFO] New CC Job: 2015-01-10 (3 pairs with 3 stations)
2017-03-20 15:18:31 [DEBUG] G2.XJ16.Z Reading 1 Files
2017-03-20 15:18:31 [DEBUG] Checking sample alignment
2017-03-20 15:18:31 [DEBUG] Checking Gaps
Intel MKL FATAL ERROR: Cannot load libmkl_def.so.
Is there something wrong with numpy?
Best Regards,
Shuye Huang
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
23 Mar
23 Mar
9:15 a.m.
New subject: Error when computing_cc
Dear Shuye,
Ah, now this bug is due to a too recent version of numpy, and a bug in
msnoise with that version. The error arises because
:Nfft/2
is not an "integer" but a float, which is no longer allowed by numpy.
So either you downgrade numpy (conda install "numpy=1.11") or you use
msnoise master from github. I'm working on a release (1.5) soon, so this
should be corrected .
Thomas
Le 23/03/2017 à 04:19, hsy119(a)mail.ustc.edu.cn a écrit :
Hi, Thomas
Sorry to reply so late.
I tried to uninstall numpy and use conda to install again, it seems no problem.
But I tried again to run compute_cc command, some error occurs again.
The bug report shows:
Process Process-1:
Traceback (most recent call last):
File "/public/software/anaconda3/lib/python3.5/multiprocessing/process.py",
line 249, in _bootstrap
self.run()
File "/public/software/anaconda3/lib/python3.5/multiprocessing/process.py",
line 93, in run
self._target(*self._args, **self._kwargs)
File
"/public/software/anaconda3/lib/python3.5/site-packages/msnoise/s03compute_cc.py",
line 653, in main
trame2h[i]*cp, Nfft, dt, low, high, plot=False)
File
"/public/software/anaconda3/lib/python3.5/site-packages/msnoise/whiten.py", line
39, in whiten
freqVec = scipy.fftpack.fftfreq(Nfft,d=delta)[:Nfft/2]
TypeError: slice indices must be integers or None or have an __index__ method
Maybe it's because I set the wrong filter? But I do not know how to correct it.
Best Wishes,
Shuye Huang
-----原始邮件-----
发件人: "Thomas Lecocq" <thomas.lecocq(a)oma.be>
发送时间: 2017-03-20 16:08:31 (星期一)
收件人: msnoise(a)mailman-as.oma.be
抄送:
主题: [SPAM] Re: [MSNoise] Error when computing_cc
Hi Shuye,
Never seen this error, it is indeed something wrong with numpy. It looks
like numpy and its dependencies haven't been installed the same way (or
installed at all). you could remove numpy (pip uninstall numpy) and,
assuming you are using anaconda, use "conda install numpy"
Thomas
Le 20/03/2017 à 08:17, hsy119(a)mail.ustc.edu.cn a écrit :
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise Hi, Thomas and users
I just got an error when I tried to run compute_cc command. It shows:
[hsy119@yhjs3 msnoise_my]$ msnoise compute_cc
2017-03-20 15:18:30 [INFO] *** Starting: Compute CC ***
2017-03-20 15:18:30 [INFO] Will compute ZZ RR TT TR RT ZR RZ TZ ZT
2017-03-20 15:18:30 [INFO] New CC Job: 2015-01-10 (3 pairs with 3 stations)
2017-03-20 15:18:31 [DEBUG] G2.XJ16.Z Reading 1 Files
2017-03-20 15:18:31 [DEBUG] Checking sample alignment
2017-03-20 15:18:31 [DEBUG] Checking Gaps
Intel MKL FATAL ERROR: Cannot load libmkl_def.so.
Is there something wrong with numpy?
Best Regards,
Shuye Huang
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
10:58 a.m.
New subject: [SPAM] Re: Error when computing_cc
Hello, Thomas
Follow your suggestion, I just downgrade numpy to 1.11, and compute_cc seems to be ok now.
Much obliged!
Looking forward to the new version!
Shuye Huang
-----原始邮件-----
发件人: "Thomas Lecocq" <thomas.lecocq(a)oma.be>
发送时间: 2017-03-23 16:15:04 (星期四)
收件人: msnoise(a)mailman-as.oma.be
抄送:
主题: [SPAM] Re: [MSNoise] Error when computing_cc
Dear Shuye,
Ah, now this bug is due to a too recent version of numpy, and a bug in
msnoise with that version. The error arises because
:Nfft/2
is not an "integer" but a float, which is no longer allowed by numpy.
So either you downgrade numpy (conda install "numpy=1.11") or you use
msnoise master from github. I'm working on a release (1.5) soon, so this
should be corrected .
Thomas
Le 23/03/2017 à 04:19, hsy119(a)mail.ustc.edu.cn a écrit :
Hi, Thomas
Sorry to reply so late.
I tried to uninstall numpy and use conda to install again, it seems no problem.
But I tried again to run compute_cc command, some error occurs again.
The bug report shows:
Process Process-1:
Traceback (most recent call last):
File "/public/software/anaconda3/lib/python3.5/multiprocessing/process.py",
line 249, in _bootstrap
self.run()
File "/public/software/anaconda3/lib/python3.5/multiprocessing/process.py",
line 93, in run
self._target(*self._args, **self._kwargs)
File
"/public/software/anaconda3/lib/python3.5/site-packages/msnoise/s03compute_cc.py",
line 653, in main
trame2h[i]*cp, Nfft, dt, low, high, plot=False)
File
"/public/software/anaconda3/lib/python3.5/site-packages/msnoise/whiten.py", line
39, in whiten
freqVec = scipy.fftpack.fftfreq(Nfft,d=delta)[:Nfft/2]
TypeError: slice indices must be integers or None or have an __index__ method
Maybe it's because I set the wrong filter? But I do not know how to correct it.
Best Wishes,
Shuye Huang
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
-----原始邮件-----
发件人: "Thomas Lecocq" <thomas.lecocq(a)oma.be>
发送时间: 2017-03-20 16:08:31 (星期一)
收件人: msnoise(a)mailman-as.oma.be
抄送:
主题: [SPAM] Re: [MSNoise] Error when computing_cc
Hi Shuye,
Never seen this error, it is indeed something wrong with numpy. It looks
like numpy and its dependencies haven't been installed the same way (or
installed at all). you could remove numpy (pip uninstall numpy) and,
assuming you are using anaconda, use "conda install numpy"
Thomas
Le 20/03/2017 à 08:17, hsy119(a)mail.ustc.edu.cn a écrit :
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
Hi, Thomas and users
I just got an error when I tried to run compute_cc command. It shows:
[hsy119@yhjs3 msnoise_my]$ msnoise compute_cc
2017-03-20 15:18:30 [INFO] *** Starting: Compute CC ***
2017-03-20 15:18:30 [INFO] Will compute ZZ RR TT TR RT ZR RZ TZ ZT
2017-03-20 15:18:30 [INFO] New CC Job: 2015-01-10 (3 pairs with 3 stations)
2017-03-20 15:18:31 [DEBUG] G2.XJ16.Z Reading 1 Files
2017-03-20 15:18:31 [DEBUG] Checking sample alignment
2017-03-20 15:18:31 [DEBUG] Checking Gaps
Intel MKL FATAL ERROR: Cannot load libmkl_def.so.
Is there something wrong with numpy?
Best Regards,
Shuye Huang
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
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2 comments
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Thomas Lecocq