8 Aug
2017
8 Aug
'17
8:33 a.m.
Dear Thomas, Corentin,
I have tried to install msnoise this morning on my Macbook, python version 3.6, for the
upcoming IAVCEI workshop.
I used your Anaconda+ObsPy bundle and then typed “pip install msnoise”. Everything went
fine until this error message:
%%%%%%%%%%%%%%%%%%
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools),
missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools),
missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
error: Command "gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG
-g -fwrapv -O3 -Wall -Wstrict-prototypes -I//anaconda/include -arch x86_64
-I//anaconda/include -arch x86_64
-I//anaconda/lib/python3.6/site-packages/numpy/core/include
-I//anaconda/include/python3.6m -c obspy/io/gse2/src/GSE_UTI/gse_functions.c -o
build/temp.macosx-10.7-x86_64-3.6/obspy/io/gse2/src/GSE_UTI/gse_functions.o" failed
with exit status 1
----------------------------------------
Command "//anaconda/bin/python -u -c "import setuptools,
tokenize;__file__='/private/var/folders/43/kdslsrsd6ds_yf5wffpcnhh40000gn/T/pip-build-10kp424f/obspy/setup.py';f=getattr(tokenize,
'open', open)(__file__);code=f.read().replace('\r\n',
'\n');f.close();exec(compile(code, __file__, 'exec'))" install
--record
/var/folders/43/kdslsrsd6ds_yf5wffpcnhh40000gn/T/pip-k2x_yyqt-record/install-record.txt
--single-version-externally-managed --compile" failed with error code 1 in
/private/var/folders/43/kdslsrsd6ds_yf5wffpcnhh40000gn/T/pip-build-10kp424f/obspy/
%%%%%%%%%%%%%%%%%%
I attach to this email a file with all my commands and outputs. Do you have any advice
regarding what I could do to fix this problem?
Thanks in advance for your help.
Regards,
Lauriane
________________________________
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8 Aug
8 Aug
9:16 a.m.
Dear Lauriane,
The problem is that the installer failed to prepend the new python PATH
to your .bash_profile , resulting in the commands (python, pip) to be
executed with your "machine python" not the one you just installed.
Then, pip install msnoise will search your system, won't find obspy, and
will try to install it...
So, just see the lines below, edit the PATH line in your .bash_profile
or .bashrc and start a new terminal. When typing "python" your should
see an Anaconda/Python 3.5 console. Then pip install msnoise should work
smoothly.
Best regards,
Thomas
On 08/08/2017 08:33, Lauriane Chardot (Dr) wrote:
Prepending PATH=/Users/lchardot/Documents/obspy/bin to
PATH in /Users/lchardot/.bash_profile
A backup will be made to:/Users/lchardot/.bash_profile-obspy.bak
For this change to become active, you have to open a new terminal.
./ObsPy-1.0.3-py35_7-MacOSX-x86_64.sh: line 374: /Users/lchardot/.bash_profile:
Permission denied
--
Dr. Thomas Lecocq
Geologist - Seismologist
Seismology - Gravimetry
Royal Observatory of Belgium
*
* * * * *
* * * *
---------
http://www.seismology.be
http://msnoise.org
http://twitter.com/#!/Seismologie_be
https://www.facebook.com/seismologie.be
12:12 p.m.
Thanks a lot Thomas for your prompt and useful reply.
I feel a bit silly because I should have seen this was a .bashrc problem.
Everything works fine now. Thanks.
See you on Saturday.
Best Regards,
Lauriane
On 8 Aug 2017, at 3:16 PM, Thomas Lecocq
<Thomas.Lecocq(a)seismology.be> wrote:
Dear Lauriane,
The problem is that the installer failed to prepend the new python PATH to your
.bash_profile , resulting in the commands (python, pip) to be executed with your
"machine python" not the one you just installed. Then, pip install msnoise will
search your system, won't find obspy, and will try to install it...
So, just see the lines below, edit the PATH line in your .bash_profile or .bashrc and
start a new terminal. When typing "python" your should see an Anaconda/Python
3.5 console. Then pip install msnoise should work smoothly.
Best regards,
Thomas
On 08/08/2017 08:33, Lauriane Chardot (Dr) wrote:
________________________________
CONFIDENTIALITY: This email is intended solely for the person(s) named and may be
confidential and/or privileged. If you are not the intended recipient, please delete it,
notify us and do not copy, use, or disclose its contents.
Towards a sustainable earth: Print only when necessary. Thank you.
Prepending
PATH=/Users/lchardot/Documents/obspy/bin to PATH in /Users/lchardot/.bash_profile
A backup will be made to:/Users/lchardot/.bash_profile-obspy.bak
For this change to become active, you have to open a new terminal.
./ObsPy-1.0.3-py35_7-MacOSX-x86_64.sh: line 374: /Users/lchardot/.bash_profile:
Permission denied
--
Dr. Thomas Lecocq
Geologist - Seismologist
Seismology - Gravimetry
Royal Observatory of Belgium
*
* * * * *
* * * *
---------
http://www.seismology.be
http://msnoise.org
http://twitter.com/#!/Seismologie_be
https://www.facebook.com/seismologie.be
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2 comments
2 participants
participants (2)
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Lauriane Chardot (Dr) -
Thomas Lecocq