16 Jun
2017
16 Jun
'17
8:31 a.m.
Oscar,
it looks like you installed python with administrative rights:
try
sudo pip uninstall msnoise
sudo pip install msnoise
Thomas
Le 15/06/2017 à 21:25, Oscar Alberto Castro Artola a écrit :
Dear Thomas,
I tried *pip uninstall msnoise*, and I get this:
Uninstalling msnoise-0+unknown:
/usr/local/anaconda/bin/msnoise
/usr/local/anaconda/lib/python2.7/site-packages/msnoise-0+unknown-py2.7.egg-info
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/MWCS.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/MWCS.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/__init__.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/__init__.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/_version.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/_version.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/api.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/api.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/bugreport.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/bugreport.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/data_structures.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/data_structures.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/default.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/default.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/msnoise_admin.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/msnoise_admin.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/msnoise_table_def.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/msnoise_table_def.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/myCorr.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/myCorr.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/__init__.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/__init__.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/ccftime.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/ccftime.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/data_availability.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/data_availability.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/distance.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/distance.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/dtt.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/dtt.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/dvv.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/dvv.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/interferogram.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/interferogram.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/mwcs.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/mwcs.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/station_map.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/station_map.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/timing.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/timing.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s000installer.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s000installer.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s001configurator.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s001configurator.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s002populate_station_table.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s002populate_station_table.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s01scan_archive.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s01scan_archive.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s02new_jobs.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s02new_jobs.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s03compute_cc.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s03compute_cc.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s04stack.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s04stack.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s05compute_mwcs.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s05compute_mwcs.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s06compute_dtt.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s06compute_dtt.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/scripts/__init__.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/scripts/__init__.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/scripts/msnoise.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/scripts/msnoise.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/static/admin/msnoise.css
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/static/admin/msnoise.png
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/static/admin/style.css
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/stretch.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/stretch.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/templates/admin/about.html
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/templates/admin/bugreport.html
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/templates/admin/data_availability.html
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/templates/admin/index.html
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/templates/admin/interferogram.html
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/templates/admin/master.html
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/templates/admin/model/edit-config.html
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/templates/admin/results.html
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/templates/index.html
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/test/__init__.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/test/__init__.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/test/data/2010/UV05/HHZ.D/YA.UV05.00.HHZ.D.2010.244
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/test/data/2010/UV06/HHZ.D/YA.UV06.00.HHZ.D.2010.244
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/test/data/2010/UV10/HHZ.D/YA.UV10.00.HHZ.D.2010.244
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/test/extra/stations.csv
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/test/run_tests.sh
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/test/tests.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/test/tests.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/whiten.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/whiten.pyc
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/whitenAM.py
/usr/local/anaconda/lib/python2.7/site-packages/msnoise/whitenAM.pyc
Proceed (y/n)? y
Exception:
Traceback (most recent call last):
File
"/usr/local/anaconda/lib/python2.7/site-packages/pip/basecommand.py", line
215, in main
status = self.run(options, args)
File
"/usr/local/anaconda/lib/python2.7/site-packages/pip/commands/uninstall.py",
line 76, in run
requirement_set.uninstall(auto_confirm=options.yes)
File
"/usr/local/anaconda/lib/python2.7/site-packages/pip/req/req_set.py", line
346, in uninstall
req.uninstall(auto_confirm=auto_confirm)
File
"/usr/local/anaconda/lib/python2.7/site-packages/pip/req/req_install.py",
line 754, in uninstall
paths_to_remove.remove(auto_confirm)
File
"/usr/local/anaconda/lib/python2.7/site-packages/pip/req/req_uninstall.py",
line 115, in remove
renames(path, new_path)
File
"/usr/local/anaconda/lib/python2.7/site-packages/pip/utils/__init__.py",
line 267, in renames
shutil.move(old, new)
File "/usr/local/anaconda/lib/python2.7/shutil.py", line 303, in move
os.unlink(src)
OSError: [Errno 13] Permission denied: '/usr/local/anaconda/bin/msnoise'
Again, thanks for your help!
Cheers,
Oscar
On Thu, Jun 15, 2017 at 11:43 AM, Thomas Lecocq <Thomas.Lecocq(a)seismology.be
wrote:
Oscar,
just try:
pip uninstall msnoise
and then
pip install msnoise
Cheers,
Tom
On 15/06/2017 18:10, Oscar Alberto Castro Artola wrote:
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise Dear Lukas,
I have tried: *pip install msnoise -U,* but I get this error. Do you know
what the problem is?
*Collecting msnoise*
*Collecting setuptools (from msnoise)*
* Using cached setuptools-36.0.1-py2.py3-none-any.whl*
*Collecting pymysql (from msnoise)*
* Using cached PyMySQL-0.7.11-py2.py3-none-any.whl*
*Collecting numpy>=1.0 (from msnoise)*
* Downloading numpy-1.13.0-cp27-cp27mu-manylinux1_x86_64.whl (16.6MB)*
* 100% |████████████████████████████████| 16.6MB 10kB/s *
*Collecting matplotlib (from msnoise)*
* Using cached matplotlib-2.0.2-cp27-cp27mu-manylinux1_x86_64.whl*
*Requirement already up-to-date: scipy in
/usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
*Collecting jinja2 (from msnoise)*
* Using cached Jinja2-2.9.6-py2.py3-none-any.whl*
*Requirement already up-to-date: wtforms in
/usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
*Collecting pandas (from msnoise)*
* Using cached pandas-0.20.2-cp27-cp27mu-manylinux1_x86_64.whl*
*Collecting flask (from msnoise)*
* Using cached Flask-0.12.2-py2.py3-none-any.whl*
*Collecting sqlalchemy (from msnoise)*
*Collecting folium (from msnoise)*
* Using cached folium-0.3.0-py2-none-any.whl*
*Collecting click (from msnoise)*
* Using cached click-6.7-py2.py3-none-any.whl*
*Collecting flask-admin (from msnoise)*
*Collecting obspy (from msnoise)*
*Collecting flask-wtf (from msnoise)*
* Using cached Flask_WTF-0.14.2-py2.py3-none-any.whl*
*Collecting markdown (from msnoise)*
*Requirement already up-to-date: python-dateutil in
/usr/local/anaconda/lib/python2.7/site-packages (from
matplotlib->msnoise)*
*Requirement already up-to-date: subprocess32 in
/usr/local/anaconda/lib/python2.7/site-packages (from
matplotlib->msnoise)*
*Requirement already up-to-date: cycler>=0.10 in
/usr/local/anaconda/lib/python2.7/site-packages/cycler-0.10.0-py2.7.egg
(from matplotlib->msnoise)*
*Requirement already up-to-date: six>=1.10 in
/usr/local/anaconda/lib/python2.7/site-packages (from
matplotlib->msnoise)*
*Requirement already up-to-date: pytz in
/usr/local/anaconda/lib/python2.7/site-packages (from
matplotlib->msnoise)*
*Requirement already up-to-date: functools32 in
/usr/local/anaconda/lib/python2.7/site-packages (from
matplotlib->msnoise)*
*Requirement already up-to-date: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=1.5.6
in /usr/local/anaconda/lib/python2.7/site-packages (from
matplotlib->msnoise)*
*Collecting MarkupSafe>=0.23 (from jinja2->msnoise)*
*Collecting Werkzeug>=0.7 (from flask->msnoise)*
* Using cached Werkzeug-0.12.2-py2.py3-none-any.whl*
*Requirement already up-to-date: itsdangerous>=0.21 in
/usr/local/anaconda/lib/python2.7/site-packages (from flask->msnoise)*
*Collecting branca (from folium->msnoise)*
* Using cached branca-0.2.0-py2-none-any.whl*
*Requirement already up-to-date: future>=0.12.4 in
/usr/local/anaconda/lib/python2.7/site-packages (from obspy->msnoise)*
*Collecting requests (from obspy->msnoise)*
* Downloading requests-2.18.1-py2.py3-none-any.whl (88kB)*
* 100% |████████████████████████████████| 92kB 4.0MB/s *
*Requirement already up-to-date: decorator in
/usr/local/anaconda/lib/python2.7/site-packages (from obspy->msnoise)*
*Collecting lxml (from obspy->msnoise)*
* Using cached lxml-3.8.0-cp27-cp27mu-manylinux1_x86_64.whl*
*Collecting chardet<3.1.0,>=3.0.2 (from requests->obspy->msnoise)*
* Downloading chardet-3.0.4-py2.py3-none-any.whl (133kB)*
* 100% |████████████████████████████████| 143kB 2.5MB/s *
*Requirement already up-to-date: certifi>=2017.4.17 in
/usr/local/anaconda/lib/python2.7/site-packages (from
requests->obspy->msnoise)*
*Collecting idna<2.6,>=2.5 (from requests->obspy->msnoise)*
* Using cached idna-2.5-py2.py3-none-any.whl*
*Collecting urllib3<1.22,>=1.21.1 (from requests->obspy->msnoise)*
* Using cached urllib3-1.21.1-py2.py3-none-any.whl*
*Installing collected packages: setuptools, pymysql, numpy, matplotlib,
MarkupSafe, jinja2, pandas, click, Werkzeug, flask, sqlalchemy, branca,
folium, flask-admin, chardet, idna, urllib3, requests, lxml, obspy,
flask-wtf, markdown, msnoise*
* Found existing installation: setuptools 33.1.1.post20170320*
* Uninstalling setuptools-33.1.1.post20170320:*
*Exception:*
*Traceback (most recent call last):*
* File
"/usr/local/anaconda/lib/python2.7/site-packages/pip/basecommand.py",
line
215, in main*
* status = self.run(options, args)*
* File
"/usr/local/anaconda/lib/python2.7/site-packages/pip/command
s/install.py",
line 342, in run*
* prefix=options.prefix_path,*
* File
"/usr/local/anaconda/lib/python2.7/site-packages/pip/req/req_set.py",
line
778, in install*
* requirement.uninstall(auto_confirm=True)*
* File
"/usr/local/anaconda/lib/python2.7/site-packages/pip/req/req_install.py",
line 754, in uninstall*
* paths_to_remove.remove(auto_confirm)*
* File
"/usr/local/anaconda/lib/python2.7/site-packages/pip/req/
req_uninstall.py",
line 115, in remove*
* renames(path, new_path)*
* File
"/usr/local/anaconda/lib/python2.7/site-packages/pip/utils/__init__.py",
line 267, in renames*
* shutil.move(old, new)*
* File "/usr/local/anaconda/lib/python2.7/shutil.py", line 303, in move*
* os.unlink(src)*
*OSError: [Errno 13] Permission denied:
'/usr/local/anaconda/bin/easy_install'*
Thank you very much for your time!
Greetings,
Oscar
On Tue, Jun 6, 2017 at 1:42 AM, Lukas Preiswerk <
preiswerk(a)vaw.baug.ethz.ch>
wrote:
Oscar,
---
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_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
I think “pip install msnoise -U” should do the
trick (-U is for
—upgrade).
Lukas
2017-06-02 18:55 GMT+02:00 Oscar Alberto Castro Artola
<oscar.cas.art(a)gmail.com>om>:
> Dear Christos and Lukas,
>
> first of all thanks for you help! I really apreciate it!
>
> Christos: I have a server with 40 cores, so I think the *-t 20* flag is
> working fine!
>
> Lukas: I tried to do a *pip install msnoise*, but I don't think it is
> actually upgrading MSNoise, the output is:
>
> *Requirement already satisfied: msnoise in
> /usr/local/anaconda/lib/python2.7/site-packages*
> *Requirement already satisfied: setuptools in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: numpy>=1.0 in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: scipy in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: pandas in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: matplotlib in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: statsmodels in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: sqlalchemy in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: obspy in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: click in
> /usr/local/anaconda/lib/python2.7/site-packages/click-4.0-py2.7.egg
>
(from
> msnoise)*
> *Requirement already satisfied: pymysql in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: flask in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: flask-admin in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: multiprocessing_logging in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: markdown in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: folium in
> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
> *Requirement already satisfied: six>=1.10 in
> /usr/local/anaconda/lib/python2.7/site-packages (from
>
matplotlib->msnoise)*
> *Requirement already satisfied: python-dateutil in
> /usr/local/anaconda/lib/python2.7/site-packages (from
>
matplotlib->msnoise)*
> *Requirement already satisfied: functools32 in
> /usr/local/anaconda/lib/python2.7/site-packages (from
>
matplotlib->msnoise)*
> *Requirement already satisfied: subprocess32 in
> /usr/local/anaconda/lib/python2.7/site-packages (from
>
matplotlib->msnoise)*
> *Requirement already satisfied: pytz in
> /usr/local/anaconda/lib/python2.7/site-packages (from
>
matplotlib->msnoise)*
> *Requirement already satisfied: cycler>=0.10 in
> /usr/local/anaconda/lib/python2.7/site-packages/cycler-0.10.0-py2.7.egg
> (from matplotlib->msnoise)*
> *Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1
> .6,>=1.5.6
>
in
> /usr/local/anaconda/lib/python2.7/site-packages (from
>
matplotlib->msnoise)*
> *Requirement already satisfied: future>=0.12.4 in
> /usr/local/anaconda/lib/python2.7/site-packages (from obspy->msnoise)*
> *Requirement already satisfied: lxml in
> /usr/local/anaconda/lib/python2.7/site-packages (from obspy->msnoise)*
> *Requirement already satisfied: decorator in
> /usr/local/anaconda/lib/python2.7/site-packages (from obspy->msnoise)*
> *Requirement already satisfied: requests in
> /usr/local/anaconda/lib/python2.7/site-packages (from obspy->msnoise)*
> *Requirement already satisfied: wtforms in
> /usr/local/anaconda/lib/python2.7/site-packages (from
>
flask-admin->msnoise)*
> *Requirement already satisfied: Jinja2 in
> /usr/local/anaconda/lib/python2.7/site-packages (from folium->msnoise)*
>
> This is the second time I do *msnoise -t 20 compute_mwcs*, last time it
> worked fine but I needed to change *dtt_lag* to "dynamic". So when I
>
tried
> to rerun* msnoise -t 20 compute_mwcs* with the new parameter this error
> message appears. What I've done is run the process in the morning, all
>
day
> it works fine, but the next morning I always find that error message.
>
> Thanks again!
>
> Oscar
>
> On Fri, Jun 2, 2017 at 8:39 AM, Lukas Preiswerk <
>
preiswerk(a)vaw.baug.ethz.ch>
> wrote:
>
> Hi Oscar
>> The problem is that “MySQL server has gone away”, so it can’t update
>> the database after finishing the MWCS job. We fixed this in the newest
>> version, so you should indeed update.
>>
>> I think that updating is done by “pip install msnoise”, and then for
>> each project “msnoise upgrade_db” (see the release notes
>> http://msnoise.org/doc/releasenotes/msnoise-1.5.html ). Tom can
>> clarify if this method I just described is actually the way to go…
>>
>> Best, Lukas
>>
>>
>>
>> 2017-06-02 15:20 GMT+02:00 Christos Evangelidis <cevan(a)noa.gr>gr>:
>>
>>> Dear Oscar,
>>>
>>> Can you really run 20 instances of the code (-t 20) ? I find the -t 20
>>> rather high, but your machine might support it..
>>>
>>> Regards,
>>>
>>> Christos
>>>
>>> Στις 1 Ιουν 2017 6:01 μμ, ο χρήστης "Oscar Alberto Castro Artola"
<
>>> oscar.cas.art(a)gmail.com> έγραψε:
>>>
>>> Hello,
>>>
>>> I have 10 years of data for 13 stations, I have computed the CCF and
>>>
>> now
> it
>>> is turn to compute the MWCS. When I do *msnoise -t 20 compute_mwcs
>>>
>> *this
> error appears:
>>> *Process Process-4:*
>>> *Traceback (most recent call last):*
>>> * File "/usr/local/anaconda/lib/python2.7/multiprocessing/
>>>
>> process.py",
> line 258, in _bootstrap*
>>> * self.run()*
>>> * File "/usr/local/anaconda/lib/python2.7/multiprocessing/
>>>
>> process.py",
> line 114, in run*
>>> * self._target(*self._args, **self._kwargs)*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/msnoise/
>>> s05compute_mwcs.py",
>>> line 150, in main*
>>> * update_job(db, day, pair, jobtype='DTT', flag='D')*
>>> * File "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> msnoise/api.py",
>>
>>> line 615, in update_job*
>>> * job = session.query(Job).filter(Job.day == day).filter(Job.pair
>>>
>> ==
> pair).filter(Job.jobtype == jobtype).first()*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> sqlalchemy/orm/query.py",
>>
>>> line 2755, in first*
>>> * ret = list(self[0:1])*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> sqlalchemy/orm/query.py",
>>
>>> line 2547, in __getitem__*
>>> * return list(res)*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> sqlalchemy/orm/query.py",
>>
>>> line 2855, in __iter__*
>>> * return self._execute_and_instances(context)*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> sqlalchemy/orm/query.py",
>>
>>> line 2878, in _execute_and_instances*
>>> * result = conn.execute(querycontext.statement, self._params)*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> sqlalchemy/engine/base.py",
>>
>>> line 945, in execute*
>>> * return meth(self, multiparams, params)*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/sqlalchemy/
>>> sql/elements.py",
>>> line 263, in _execute_on_connection*
>>> * return connection._execute_clauseelement(self, multiparams,
>>>
>> params)*
>>
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> sqlalchemy/engine/base.py",
>>
>>> line 1053, in _execute_clauseelement*
>>> * compiled_sql, distilled_params*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> sqlalchemy/engine/base.py",
>>
>>> line 1189, in _execute_context*
>>> * context)*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> sqlalchemy/engine/base.py",
>>
>>> line 1402, in _handle_dbapi_exception*
>>> * exc_info*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> sqlalchemy/util/compat.py",
>>
>>> line 203, in raise_from_cause*
>>> * reraise(type(exception), exception, tb=exc_tb, cause=cause)*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> sqlalchemy/engine/base.py",
>>
>>> line 1182, in _execute_context*
>>> * context)*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/sqlalchemy/
>>> engine/default.py",
>>> line 470, in do_execute*
>>> * cursor.execute(statement, parameters)*
>>> * File
>>>
"/usr/local/anaconda/lib/python2.7/site-packages/pymysql/cursors.py",
>>>
>> line
>>
>>> 158, in execute*
>>> * result = self._query(query)*
>>> * File
>>>
"/usr/local/anaconda/lib/python2.7/site-packages/pymysql/cursors.py",
>>>
>> line
>>
>>> 308, in _query*
>>> * conn.query(q)*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> pymysql/connections.py",
>>
>>> line 819, in query*
>>> * self._execute_command(COMMAND.COM_QUERY, sql)*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> pymysql/connections.py",
>>
>>> line 1037, in _execute_command*
>>> * self._write_bytes(packet)*
>>> * File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>
>> pymysql/connections.py",
>>
>>> line 989, in _write_bytes*
>>> * raise err.OperationalError(2006, "MySQL server has gone away
>>>
>> (%r)" %
> (e,))*
>>> *OperationalError: (pymysql.err.OperationalError) (2006, "MySQL server
>>>
>> has
>>
>>> gone away (error(32, 'Broken pipe'))") [SQL: u'SELECT
jobs.ref AS
>>>
>> jobs_ref,
>>
>>> jobs.day AS jobs_day, jobs.pair AS jobs_pair, jobs.jobtype AS
>>>
>> jobs_jobtype,
>>
>>> jobs.flag AS jobs_flag, jobs.lastmod AS jobs_lastmod \nFROM jobs
>>>
>> \nWHERE
> jobs.day = %(day_1)s AND jobs.pair = %(pair_1)s AND jobs.jobtype =
>>> %(jobtype_1)s \n LIMIT %(param_1)s'] [parameters: {u'param_1':
1,
>>>
>> u'day_1':
>>
>>> '2009-02-16', u'jobtype_1': 'DTT',
u'pair_1': 'IG.ARIG:IG.MOIG'}]*
>>>
>>> At the beginning everything works fine, but because it takes a long
>>>
>> time
> to
>>> make the computation (around 5 days), every time that I come back to
>>>
>> see
> the results this happens. I am working with MSNoise 1.4 and I don't
>> know
> how to upgrade to MSNoise 1.5.
>>> Does anyone know how to fix this?
>>>
>>> Thanks in advance!
>>>
>>> Oscar
>>> _______________________________________________
>>> MSNoise mailing list
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>>> http://mailman-as.oma.be/mailman/listinfo/msnoise
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>>> http://mailman-as.oma.be/mailman/listinfo/msnoise
>>>
>> _______________________________________________
>> MSNoise mailing list
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>> http://mailman-as.oma.be/mailman/listinfo/msnoise
>>
>> _______________________________________________
> MSNoise mailing list
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> http://mailman-as.oma.be/mailman/listinfo/msnoise
>
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