7 Apr
2017
7 Apr
'17
9:53 a.m.
I have deleted in line 1500 the "xtol=1e-20" and it works.
Christos
On Fri, Apr 7, 2017 at 10:46 AM, Thomas Lecocq <thomas.lecocq(a)oma.be> wrote:
It looks like the xtol is still there... although it
indeed looks like
another error.
Le 07/04/2017 à 09:42, Christos Evangelidis a écrit :
--
---------------------------------------------------------------
Dr. Christos Evangelidis
Associate Researcher - Seismologist
Hellenic Broadband Seismic Network
INSTITUTE OF GEODYNAMICS
NATIONAL OBSERVATORY OF ATHENS
Tel:+30 210 3490043
Email: cevan(a)noa.gr
Www: http://members.noa.gr/cevan/en/
---------------------------------------------------------------
But now it stops after a while with this:
raceback (most recent call last):
File "/home/noise/anaconda2/bin/msnoise", line 11, in <module>
load_entry_point('msnoise==1.5a0', 'console_scripts',
'msnoise')()
File
"/home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
scripts/msnoise.py",
line 708, in run
cli(obj={})
File "/home/noise/anaconda2/lib/python2.7/site-packages/click/cor
e.py",
line 722, in __call__
return self.main(*args, **kwargs)
File "/home/noise/anaconda2/lib/python2.7/site-packages/click/cor
e.py",
line 697, in main
rv = self.invoke(ctx)
File "/home/noise/anaconda2/lib/python2.7/site-packages/click/cor
e.py",
line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/noise/anaconda2/lib/python2.7/site-packages/click/cor
e.py",
line 895, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/noise/anaconda2/lib/python2.7/site-packages/click/cor
e.py",
line 535, in invoke
return callback(*args, **kwargs)
File
"/home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
scripts/msnoise.py",
line 421, in compute_dtt
main(interval)
File
"/home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
s06compute_dtt.py",
line 359, in main
intercept_origin=True)
File "/home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
api.py",
line 1500, in linear_regression
xtol=1e-20)
File
"/home/noise/anaconda2/lib/python2.7/site-packages/scipy/opt
imize/minpack.py",
line 740, in curve_fit
raise RuntimeError("Optimal parameters not found: " + errmsg)
RuntimeError: Optimal parameters not found: gtol=0.000000 is too small,
func(x) is orthogonal to the columns of
the Jacobian to machine precision.
On Fri, Apr 7, 2017 at 10:41 AM, Christos Evangelidis <cevan(a)noa.gr>
wrote:
Thank you!
_______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
It works!
Christos
On Fri, Apr 7, 2017 at 10:34 AM, Thomas Lecocq <thomas.lecocq(a)oma.be>
wrote:
Christos
could you edit the api:
/home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
api.py",
line 1508, in linear_regression
and remove the parameter xtol=1e-20, so scipy would use the default 1e-8
or so ; reset your DTT jobs and relaunch ?
Thanks
Thomas
Le 07/04/2017 à 09:28, Christos Evangelidis a écrit :
Hi Thomas,
>
> Yes I am using the latest master version.
>
> Christos
>
>
> On Fri, Apr 7, 2017 at 10:22 AM, Thomas Lecocq <thomas.lecocq(a)oma.be>
> wrote:
>
> Hi Christos,
>
>> you're using the latest master version ?
>>
>> It looks like the linear regression complains ; will have to look into
>> it
>> before 1.5 ... :(
>>
>> Thomas
>>
>>
>>
>> Le 06/04/2017 à 12:42, Christos Evangelidis a écrit :
>>
>> Hi all,
>>
>>> I have the following error trying to calculate the DTT with the
>>> command
>>> (master version)
>>>
>>> msnoise compute_dtt -i 999
>>>
>>> for 2 stations with autocorrelations. It seems that the script stacks
>>> in a
>>> some days (eg. 2011-02-27).
>>>
>>> Any idea?
>>>
>>> Cheers,
>>>
>>> Christos
>>>
>>> -----------------------------------------------
>>> 2017-04-06 10:37:45 [INFO] *** Starting: Compute DT/T ***
>>> 2017-04-06 10:37:45 [DEBUG] Found 2229 updated days
>>> 2017-04-06 10:37:45 [INFO] Loading mov=5 days for filter=02
>>> 2017-04-06 10:37:45 [DEBUG] Processing 2011-02-03 - 02 - 05 mov
>>> /home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
>>> s06compute_dtt.py:140:
>>> RuntimeWarning: invalid value encountered in double_scalars
>>> wavg = (d * w).sum() / w.sum()
>>> /home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
>>> s06compute_dtt.py:142:
>>> RuntimeWarning: invalid value encountered in double_scalars
>>> wstd = np.sqrt(np.sum(w * (d - wavg) ** 2) / ((N - 1) *
>>> np.sum(w)
>>> / N))
>>> /home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
>>> s06compute_dtt.py:340:
>>> RuntimeWarning: invalid value encountered in less_equal
>>> errindex = np.where(errArray[i] <= maxErr)[0]
>>> /home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
>>> s06compute_dtt.py:341:
>>> RuntimeWarning: invalid value encountered in less_equal
>>> dtindex = np.where(np.abs(dtArray[i]) <= maxDt)[0]
>>> 2017-04-06 10:37:45 [DEBUG] 2011-02-03: exporting: 4 pairs
>>> 2017-04-06 10:37:45 [DEBUG] Processing 2011-02-04 - 02 - 05 mov
>>> 2017-04-06 10:37:45 [DEBUG] 2011-02-04: exporting: 4 pairs
>>> 2017-04-06 10:37:45 [DEBUG] Processing 2011-02-05 - 02 - 05 mov
>>> 2017-04-06 10:37:45 [DEBUG] 2011-02-05: exporting: 4 pairs
>>> 2017-04-06 10:37:45 [DEBUG] Processing 2011-02-06 - 02 - 05 mov
>>> 2017-04-06 10:37:45 [DEBUG] 2011-02-06: exporting: 4 pairs
>>> 2017-04-06 10:37:45 [DEBUG] Processing 2011-02-07 - 02 - 05 mov
>>> 2017-04-06 10:37:45 [DEBUG] 2011-02-07: exporting: 4 pairs
>>> 2017-04-06 10:37:45 [DEBUG] Processing 2011-02-08 - 02 - 05 mov
>>> 2017-04-06 10:37:45 [DEBUG] 2011-02-08: exporting: 4 pairs
>>> 2017-04-06 10:37:45 [DEBUG] Processing 2011-02-09 - 02 - 05 mov
>>> /home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
>>> s06compute_dtt.py:142:
>>> RuntimeWarning: divide by zero encountered in double_scalars
>>> wstd = np.sqrt(np.sum(w * (d - wavg) ** 2) / ((N - 1) *
>>> np.sum(w)
>>> / N))
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-09: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-10 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-10: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-11 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-11: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-13 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-13: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-14 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-14: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-15 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-15: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-16 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-16: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-17 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-17: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-18 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-18: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-19 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-19: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-20 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-20: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-21 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-21: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-22 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-22: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-23 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-23: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-24 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-24: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-25 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-25: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-26 - 02 - 05 mov
>>> 2017-04-06 10:37:46 [DEBUG] 2011-02-26: exporting: 4 pairs
>>> 2017-04-06 10:37:46 [DEBUG] Processing 2011-02-27 - 02 - 05 mov
>>> Traceback (most recent call last):
>>> File "/home/noise/anaconda2/bin/msnoise", line 11, in
<module>
>>> load_entry_point('msnoise==1.5a0',
'console_scripts',
>>> 'msnoise')()
>>> File
>>> "/home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
>>> scripts/msnoise.py",
>>> line 708, in run
>>> cli(obj={})
>>> File "/home/noise/anaconda2/lib/pyt
>>> hon2.7/site-packages/click/cor
>>> e.py",
>>> line 722, in __call__
>>> return self.main(*args, **kwargs)
>>> File "/home/noise/anaconda2/lib/pyt
>>> hon2.7/site-packages/click/cor
>>> e.py",
>>> line 697, in main
>>> rv = self.invoke(ctx)
>>> File "/home/noise/anaconda2/lib/pyt
>>> hon2.7/site-packages/click/cor
>>> e.py",
>>> line 1066, in invoke
>>> return _process_result(sub_ctx.command.invoke(sub_ctx))
>>> File "/home/noise/anaconda2/lib/pyt
>>> hon2.7/site-packages/click/cor
>>> e.py",
>>> line 895, in invoke
>>> return ctx.invoke(self.callback, **ctx.params)
>>> File "/home/noise/anaconda2/lib/pyt
>>> hon2.7/site-packages/click/cor
>>> e.py",
>>> line 535, in invoke
>>> return callback(*args, **kwargs)
>>> File
>>> "/home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
>>> scripts/msnoise.py",
>>> line 421, in compute_dtt
>>> main(interval)
>>> File
>>> "/home/noise/anaconda2/lib/python2.7/site-packages/msnoise/
>>> s06compute_dtt.py",
>>> line 356, in main
>>> intercept_origin=False)
>>> File "/home/noise/anaconda2/lib/pyt
>>> hon2.7/site-packages/msnoise/
>>> api.py",
>>> line 1508, in linear_regression
>>> xtol=1e-20)
>>> File
>>> "/home/noise/anaconda2/lib/python2.7/site-packages/scipy/opt
>>> imize/minpack.py",
>>> line 740, in curve_fit
>>> raise RuntimeError("Optimal parameters not found: " +
errmsg)
>>> RuntimeError: Optimal parameters not found: xtol=0.000000 is too
>>> small, no
>>> further improvement in the approximate
>>> solution is possible.
>>> _______________________________________________
>>> MSNoise mailing list
>>> MSNoise(a)mailman-as.oma.be
>>> http://mailman-as.oma.be/mailman/listinfo/msnoise
>>>
>>> _______________________________________________
>>>
>> MSNoise mailing list
>> MSNoise(a)mailman-as.oma.be
>> http://mailman-as.oma.be/mailman/listinfo/msnoise
>>
>>
>>
> _______________________________________________
MSNoise mailing list
MSNoise(a)mailman-as.oma.be
http://mailman-as.oma.be/mailman/listinfo/msnoise
--
---------------------------------------------------------------
Dr. Christos Evangelidis
Associate Researcher - Seismologist
Hellenic Broadband Seismic Network
INSTITUTE OF GEODYNAMICS
NATIONAL OBSERVATORY OF ATHENS
Tel:+30 210 3490043 <+30%2021%200349%200043>
Email: cevan(a)noa.gr
Www: http://members.noa.gr/cevan/en/
---------------------------------------------------------------