[MSNoise] Problems performing Cross-correlation

Hi All;  After upgrading my obspy, I am having problems with the Cross-correlation process:  msnoise compute_cc /Users/ech/github/obspy/obspy/__init__.py:150: ObsPyDeprecationWarning: Module 'obspy.sac' is deprecated and will stop working with the next ObsPy version. Please import module 'obspy.io.sac' instead.   ObsPyDeprecationWarning) /Users/ech/github/obspy/obspy/core/util/deprecation_helpers.py:55: ObsPyDeprecationWarning: Function 'obspy.core.util.gps2DistAzimuth' is deprecated and will stop working with the next ObsPy version. Please use 'obspy.geodetics.gps2dist_azimuth' instead.   ObsPyDeprecationWarning) 2015-10-13 19:48:12 [INFO] *** Starting: Compute CC *** 2015-10-13 19:48:12 [INFO] Will compute ZZ 2015-10-13 19:48:12 [INFO] New CC Job: 2012-01-01 (1 pairs with 2 stations) 2015-10-13 19:48:16 [INFO] Pre-Whitening Traces 2015-10-13 19:48:16 [INFO] Processing CC Traceback (most recent call last):   File "/Users/ech/anaconda/bin/msnoise", line 9, in <module>     load_entry_point('msnoise==1.3', 'console_scripts', 'msnoise')()   File "/Users/ech/anaconda/lib/python2.7/site-packages/msnoise-1.3-py2.7.egg/msnoise/scripts/msnoise.py", line 392, in run     cli(obj={})   File "/Users/ech/anaconda/lib/python2.7/site-packages/click-3.3-py2.7.egg/click/core.py", line 610, in __call__     return self.main(*args, **kwargs)   File "/Users/ech/anaconda/lib/python2.7/site-packages/click-3.3-py2.7.egg/click/core.py", line 590, in main     rv = self.invoke(ctx)   File "/Users/ech/anaconda/lib/python2.7/site-packages/click-3.3-py2.7.egg/click/core.py", line 936, in invoke     return _process_result(sub_ctx.command.invoke(sub_ctx))   File "/Users/ech/anaconda/lib/python2.7/site-packages/click-3.3-py2.7.egg/click/core.py", line 782, in invoke     return ctx.invoke(self.callback, **ctx.params)   File "/Users/ech/anaconda/lib/python2.7/site-packages/click-3.3-py2.7.egg/click/core.py", line 416, in invoke     return callback(*args, **kwargs)   File "/Users/ech/anaconda/lib/python2.7/site-packages/msnoise-1.3-py2.7.egg/msnoise/scripts/msnoise.py", line 173, in compute_cc     main()   File "/Users/ech/anaconda/lib/python2.7/site-packages/msnoise-1.3-py2.7.egg/msnoise/s03compute_cc.py", line 363, in main     thisdate, thistime, params.min30 / params.goal_sampling_rate, 'ZZ', daycorr, params.goal_sampling_rate, day=True, ncorr=ndaycorr)   File "/Users/ech/anaconda/lib/python2.7/site-packages/msnoise-1.3-py2.7.egg/msnoise/api.py", line 851, in add_corr     ncorr)   File "/Users/ech/anaconda/lib/python2.7/site-packages/msnoise-1.3-py2.7.egg/msnoise/api.py", line 891, in export_sac     tr = SacIO(filename)   File "/Users/ech/github/obspy/obspy/io/sac/sacio.py", line 298, in __init__     self.read_sac_file(filen)   File "/Users/ech/github/obspy/obspy/io/sac/sacio.py", line 608, in read_sac_file     self.hf = from_buffer(fh.read(4 * 70), dtype=native_str('<f4')) AttributeError: 'str' object has no attribute 'read' Has anyone encountered this problem before? Thanks in advance,  -Esteban --  Graduate Student in Seismology University of California Santa Cruz Santa Cruz, California 95064 echavess(a)ucsc.edu / ec.sibaja(a)gmail.com On August 24, 2015 at 4:59:40 AM, msnoise-request(a)mailman-as.oma.be (msnoise-request(a)mailman-as.oma.be) wrote: Send MSNoise mailing list submissions to msnoise(a)mailman-as.oma.be To subscribe or unsubscribe via the World Wide Web, visit http://mailman-as.oma.be/mailman/listinfo/msnoise or, via email, send a message with subject or body 'help' to msnoise-request(a)mailman-as.oma.be You can reach the person managing the list at msnoise-owner(a)mailman-as.oma.be When replying, please edit your Subject line so it is more specific than "Re: Contents of MSNoise digest..." Today's Topics: 1. Path problem on a windows system (Zhikun Liu) 2. Re: Path problem on a windows system (Thomas Lecocq) 3. Re: Path problem on a windows system (Zhikun Liu) ---------------------------------------------------------------------- Message: 1 Date: Mon, 24 Aug 2015 01:36:35 +0800 (GMT+08:00) From: "Zhikun Liu" &lt;zkliu(a)cugb.edu.cn&gt; To: msnoise(a)mailman-as.oma.be Subject: [MSNoise] Path problem on a windows system Message-ID: &lt;950c1b5.f5e5.14f5ba21f72.Coremail.zkliu(a)cugb.edu.cn&gt; Content-Type: text/plain; charset=GBK Dear Thomas and All, I am a beginner of MSNoise and Python, but I am very interested in this powerful tool. I installed msnoise on a windows system. When run "msnoise test", I got the following output. Please note the line above star line. It seems that the path is wrong (a '\' is replaced by '/' as in linux system). How to fix it? Many thanks. ................................................................................. test_006_get_stations (msnoise.test.tests.MSNoiseTests) ... ok test_007_update_stations (msnoise.test.tests.MSNoiseTests) ... ok test_008_scan_archive (msnoise.test.tests.MSNoiseTests) ... 2015-08-24 00:16:02 [INFO] *** Starting: Scan Archive *** 2015-08-24 00:16:02 [INFO] Initializing (should be run only once) 2015-08-24 00:16:02 [INFO] Will work on 1 threads 2015-08-24 00:16:02 [INFO] Started: C:\Users\ZL\Anaconda\lib\site-packages\ms noise\test\data\2010/UV05\HHZ.D ************************************ Traceback (most recent call last): File "<string>", line 1, in <module> File "C:\Users\ZL\Anaconda\lib\multiprocessing\forking.py", line 380, in ma in prepare(preparation_data) File "C:\Users\ZL\Anaconda\lib\multiprocessing\forking.py", line 488, in pr epare assert main_name not in sys.modules, main_name AssertionError: __main__ [INFO/Process-1] process shutting down [DEBUG/Process-1] running all "atexit" finalizers with priority >= 0 [DEBUG/Process-1] running the remaining "atexit" finalizers 2015-08-24 00:16:02 [INFO] Started: C:\Users\ZKLIU\Anaconda\lib\site-packages\ms noise\test\data\2010/UV06\HHZ.D Traceback (most recent call last): File "<string>", line 1, in <module> File "C:\Users\ZL\Anaconda\lib\multiprocessing\forking.py", line 380, in ma in prepare(preparation_data) File "C:\Users\ZL\Anaconda\lib\multiprocessing\forking.py", line 488, in pr epare assert main_name not in sys.modules, main_name AssertionError: __main__ [INFO/Process-2] process shutting down ......................... Zhikun at CUGB ------------------------------ Message: 2 Date: Sun, 23 Aug 2015 20:50:29 +0200 From: Thomas Lecocq &lt;thlecocq(a)gmail.com&gt; To: Python Package for Monitoring Seismic Velocity Changes using Ambient Seismic Noise &lt;msnoise(a)mailman-as.oma.be&gt; Subject: Re: [MSNoise] Path problem on a windows system Message-ID: &lt;CA+U7X7vL_NUkLVRXrazXpN919ouQYfyKpe5zOSYtyATaCudaUQ(a)mail.gmail.com&gt; Content-Type: text/plain; charset=UTF-8 Hi! It looks like a python problem on your machine. Is your username not-utf8? It looks like two process don't use the same folder naming. It's a known problem with python 2 ... msnoise is not yet py 3 compatible. If that is the case, look for py2/anaconda issues with chinese/other user names. Cheers Thomas On 23 Aug 2015 19:19, "Zhikun Liu" &lt;zkliu(a)cugb.edu.cn&gt; wrote: ------------------------------ Message: 3 Date: Mon, 24 Aug 2015 03:51:09 +0800 (GMT+08:00) From: "Zhikun Liu" &lt;zkliu(a)cugb.edu.cn&gt; To: "Python Package for Monitoring Seismic Velocity Changes using Ambient Seismic Noise" &lt;msnoise(a)mailman-as.oma.be&gt; Subject: Re: [MSNoise] Path problem on a windows system Message-ID: &lt;6bd89c2e.f61a.14f5c1d506f.Coremail.zkliu(a)cugb.edu.cn&gt; Content-Type: text/plain; charset=GBK Dear Thomas, Yes, i used the py3/anaconda, which may be the reason. Now I move to work in the enviorment of linux using py2. It works well. Thanks. Zhikun ------------------------------ _______________________________________________ MSNoise mailing list MSNoise(a)mailman-as.oma.be http://mailman-as.oma.be/mailman/listinfo/msnoise End of MSNoise Digest, Vol 20, Issue 4 **************************************