MSNoise

msnoise@lists.observatory.be

349 discussions

by Yawar Hussain

Hello, I have problem with stacking: yawar@yawar-Vostro-5470:~/anaconda3/bin$ msnoise stack -r Lets STACK ! 2018-08-18 09:52:14 [DEBUG] Starting the ref stack [] 2018-08-18 09:52:14 [DEBUG] Processing LS_DF01:LS_DF02-ZZ-1 Traceback (most recent call last): File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/base.py", line 1139, in _execute_context context) File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/default.py", line 450, in do_execute cursor.execute(statement, parameters) File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/cursors.py", line 166, in execute result = self._query(query) File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/cursors.py", line 322, in _query conn.query(q) File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py", line 835, in query self._affected_rows = self._read_query_result(unbuffered=unbuffered) File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py", line 1019, in _read_query_result result.read() File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py", line 1302, in read first_packet = self.connection._read_packet() File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py", line 981, in _read_packet packet.check_error() File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py", line 393, in check_error err.raise_mysql_exception(self._data) File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/err.py", line 107, in raise_mysql_exception raise errorclass(errno, errval) pymysql.err.InternalError: (1055, "Expression #1 of SELECT list is not in GROUP BY clause and contains nonaggregated column 'msnoise.jobs.ref' which is not functionally dependent on columns in GROUP BY clause; this is incompatible with sql_mode=only_full_group_by") The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/yawar/anaconda3/bin/msnoise", line 11, in <module> sys.exit(run()) File "/home/yawar/anaconda3/lib/python3.5/site-packages/msnoise/scripts/msnoise.py", line 614, in run cli(obj={}) File "/home/yawar/anaconda3/lib/python3.5/site-packages/click/core.py", line 716, in __call__ return self.main(*args, **kwargs) File "/home/yawar/anaconda3/lib/python3.5/site-packages/click/core.py", line 696, in main rv = self.invoke(ctx) File "/home/yawar/anaconda3/lib/python3.5/site-packages/click/core.py", line 1060, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/home/yawar/anaconda3/lib/python3.5/site-packages/click/core.py", line 889, in invoke return ctx.invoke(self.callback, **ctx.params) File "/home/yawar/anaconda3/lib/python3.5/site-packages/click/core.py", line 534, in invoke return callback(*args, **kwargs) File "/home/yawar/anaconda3/lib/python3.5/site-packages/msnoise/scripts/msnoise.py", line 301, in stack main('ref', interval) File "/home/yawar/anaconda3/lib/python3.5/site-packages/msnoise/s04stack.py", line 203, in main updated_days = updated_days_for_dates(db, start, end, pair.replace('_', '.'), jobtype='CC', interval=datetime.timedelta(days=interval),returndays=True) File "/home/yawar/anaconda3/lib/python3.5/site-packages/msnoise/api.py", line 1189, in updated_days_for_dates days = session.query(Job).filter(Job.pair == pair).filter(Job.day >= date1).filter(Job.day <= date2).filter(Job.jobtype == jobtype).filter(Job.lastmod >= lastmod).group_by(Job.day).order_by(Job.day).all() File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/orm/query.py", line 2613, in all return list(self) File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/orm/query.py", line 2761, in __iter__ return self._execute_and_instances(context) File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/orm/query.py", line 2776, in _execute_and_instances result = conn.execute(querycontext.statement, self._params) File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/base.py", line 914, in execute return meth(self, multiparams, params) File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/sql/elements.py", line 323, in _execute_on_connection return connection._execute_clauseelement(self, multiparams, params) File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/base.py", line 1010, in _execute_clauseelement compiled_sql, distilled_params File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/base.py", line 1146, in _execute_context context) File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/base.py", line 1341, in _handle_dbapi_exception exc_info File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/util/compat.py", line 202, in raise_from_cause reraise(type(exception), exception, tb=exc_tb, cause=cause) File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/util/compat.py", line 185, in reraise raise value.with_traceback(tb) File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/base.py", line 1139, in _execute_context context) File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/default.py", line 450, in do_execute cursor.execute(statement, parameters) File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/cursors.py", line 166, in execute result = self._query(query) File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/cursors.py", line 322, in _query conn.query(q) File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py", line 835, in query self._affected_rows = self._read_query_result(unbuffered=unbuffered) File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py", line 1019, in _read_query_result result.read() File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py", line 1302, in read first_packet = self.connection._read_packet() File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py", line 981, in _read_packet packet.check_error() File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py", line 393, in check_error err.raise_mysql_exception(self._data) File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/err.py", line 107, in raise_mysql_exception raise errorclass(errno, errval) sqlalchemy.exc.InternalError: (pymysql.err.InternalError) (1055, "Expression #1 of SELECT list is not in GROUP BY clause and contains nonaggregated column 'msnoise.jobs.ref' which is not functionally dependent on columns in GROUP BY clause; this is incompatible with sql_mode=only_full_group_by") [SQL: 'SELECT jobs.ref AS jobs_ref, jobs.day AS jobs_day, jobs.pair AS jobs_pair, jobs.jobtype AS jobs_jobtype, jobs.flag AS jobs_flag, jobs.lastmod AS jobs_lastmod \nFROM jobs \nWHERE jobs.pair = %(pair_1)s AND jobs.day >= %(day_1)s AND jobs.day <= %(day_2)s AND jobs.jobtype = %(jobtype_1)s AND jobs.lastmod >= %(lastmod_1)s GROUP BY jobs.day ORDER BY jobs.day'] [parameters: {'lastmod_1': datetime.datetime(2018, 8, 17, 9, 52, 14, 839671), 'jobtype_1': 'CC', 'day_2': datetime.date(2017, 12, 13), 'day_1': datetime.date(2017, 12, 9), 'pair_1': 'LS.DF01:LS.DF02'}] Regards, Yawar Hussain Ph.D. Student, Geotechnical Engineering Dpt. Civil and Environmental Engg. University of Brasilia, Brazil.

7 years, 1 month

CCF

by Linda Akromah

Hello This is a CCF of two stations that are 10km apart.Please tell me what could be causing the impulse at the origin.Is it acceptable? Kind regards Linda Akromah

7 years, 2 months

Fwd: HELP

by Veronica Montenegro

Hello there, I'm installing Msnoise 1.5.1 on a computer with Debian. I'm not using Anaconda, but I've installed the necessary packages with pip and the package repository. My problem is that when I run the bug report it seems that everything is correct, but when I run msnoise test I have many errors and I don't know how to fix them. I attached the bugreport and the test results. I hope you can help me, Cheers, ************* Computer Report ************* ----------------+SYSTEM+------------------- Linux debian-vero 3.16.0-5-amd64 #1 SMP Debian 3.16.51-3+deb8u1 (2018-01-08) x86_64 debian - 8.10 - ----------------+PYTHON+------------------- Python:2.7.9 (default, Jun 29 2016, 13:08:31) [GCC 4.9.2] This script is at /usr/local/lib/python2.7/dist- packages/msnoise/bugreport.pyc ---------------+MODULES+------------------- Required: [X] setuptools: 39.0.1 [X] numpy: 1.8.2 [X] scipy: 0.14.0 [X] pandas: 0.14.1 [X] matplotlib: 1.4.2 [X] sqlalchemy: 1.2.10 [X] obspy: 1.1.0 [X] click: 6.6 [X] pymysql: 0.7.6.None [X] flask: 0.10.1 [X] flask_admin: 1.5.1 [X] markdown: <module 'markdown.__version__' from '/usr/lib/python2.7/dist- packages/markdown/__version__.pyc'> [X] wtforms: 2.0.1 [X] folium: 0.6.0 [X] jinja2: 2.7.3 Only necessary if you plan to build the doc locally: [X] sphinx: 1.7.6 Graphical Backends: (at least one is required) [ ] wx: not found [ ] pyqt: not found [X] PySide: 1.2.2 Not required, just checking: [X] json: 2.0.9 [ ] psutil: not found [X] reportlab: $Id$ [ ] configobj: not found [X] pkg_resources: present (no version) [X] paramiko: 1.15.1 [X] ctypes: 1.1.0 [X] pyparsing: 2.2.0 [X] distutils: 2.7.9 [X] IPython: 5.8.0 [ ] vtk: not found [ ] enable: not found [ ] traitsui: not found [ ] traits: not found [ ] scikits.samplerate: not found test_001_S01installer (msnoise.test.tests.MSNoiseTests) ... ERROR test_002_ConnectToDB (msnoise.test.tests.MSNoiseTests) ... ERROR test_003_set_and_config (msnoise.test.tests.MSNoiseTests) ... ERROR test_004_set_and_get_filters (msnoise.test.tests.MSNoiseTests) ... ERROR test_005_populate_station_table (msnoise.test.tests.MSNoiseTests) ... ERROR test_006_get_stations (msnoise.test.tests.MSNoiseTests) ... ERROR test_007_update_stations (msnoise.test.tests.MSNoiseTests) ... ERROR test_008_scan_archive (msnoise.test.tests.MSNoiseTests) ... ERROR test_009_control_data_availability (msnoise.test.tests.MSNoiseTests) ... ERROR test_010_new_jobs (msnoise.test.tests.MSNoiseTests) ... ERROR test_011_control_jobs (msnoise.test.tests.MSNoiseTests) ... ERROR test_012_reset_jobs (msnoise.test.tests.MSNoiseTests) ... ERROR test_012b_hack_noresample (msnoise.test.tests.MSNoiseTests) ... ERROR test_013_s03compute_cc (msnoise.test.tests.MSNoiseTests) ... ERROR test_014_check_done_jobs (msnoise.test.tests.MSNoiseTests) ... ERROR test_015_check_cc_files (msnoise.test.tests.MSNoiseTests) ... ERROR test_016_update_config (msnoise.test.tests.MSNoiseTests) ... ERROR test_017_reset_cc_jobs (msnoise.test.tests.MSNoiseTests) ... ERROR test_018_recompute_cc (msnoise.test.tests.MSNoiseTests) ... ERROR test_019_check_SACS (msnoise.test.tests.MSNoiseTests) ... ERROR test_020_update_config (msnoise.test.tests.MSNoiseTests) ... ERROR test_021_reprocess_BOTH (msnoise.test.tests.MSNoiseTests) ... ERROR test_022_check_content (msnoise.test.tests.MSNoiseTests) ... ERROR test_023_stack (msnoise.test.tests.MSNoiseTests) ... ERROR test_024_mwcs (msnoise.test.tests.MSNoiseTests) ... ERROR test_025_dtt (msnoise.test.tests.MSNoiseTests) ... ERROR test_026_build_ref_datelist (msnoise.test.tests.MSNoiseTests) ... ERROR test_027_build_movstack_datelist (msnoise.test.tests.MSNoiseTests) ... ERROR test_028_stretching (msnoise.test.tests.MSNoiseTests) ... ERROR test_029_create_fake_new_files (msnoise.test.tests.MSNoiseTests) ... ERROR test_030_instrument_response (msnoise.test.tests.MSNoiseTests) ... ERROR test_099_S01installer (msnoise.test.tests.MSNoiseTests) ... Seems to be running on local machine, skipping MySQL test ok ====================================================================== ERROR: test_001_S01installer (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 19, in test_001_S01installer from ..s000installer import main File "/usr/local/lib/python2.7/dist-packages/msnoise/s000installer.py", line 41, in <module> from .api import create_database_inifile File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_002_ConnectToDB (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 29, in test_002_ConnectToDB from ..api import connect File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_003_set_and_config (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 37, in test_003_set_and_config from ..api import connect, get_config, update_config File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_004_set_and_get_filters (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 54, in test_004_set_and_get_filters from ..api import connect, update_filter, get_filters File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_005_populate_station_table (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 90, in test_005_populate_station_table from ..s002populate_station_table import main File "/usr/local/lib/python2.7/dist-packages/msnoise/ s002populate_station_table.py", line 81, in <module> from .api import * File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_006_get_stations (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 98, in test_006_get_stations from ..api import connect, get_stations File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_007_update_stations (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 105, in test_007_update_stations from ..api import connect, get_stations, update_station File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_008_scan_archive (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 126, in test_008_scan_archive from ..s01scan_archive import main File "/usr/local/lib/python2.7/dist-packages/msnoise/s01scan_archive.py", line 56, in <module> from .api import * File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_009_control_data_availability (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 134, in test_009_control_data_availability from ..api import connect, get_new_files, get_data_availability,\ File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_010_new_jobs (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 150, in test_010_new_jobs from ..s02new_jobs import main File "/usr/local/lib/python2.7/dist-packages/msnoise/s02new_jobs.py", line 18, in <module> from .api import * File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_011_control_jobs (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 159, in test_011_control_jobs from ..api import connect, is_next_job, get_next_job File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_012_reset_jobs (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 168, in test_012_reset_jobs from ..api import connect, reset_jobs File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_012b_hack_noresample (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 174, in test_012b_hack_noresample from ..api import connect, update_config File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_013_s03compute_cc (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 180, in test_013_s03compute_cc from ..s03compute_cc import main File "/usr/local/lib/python2.7/dist-packages/msnoise/s03compute_cc.py", line 163, in <module> from .api import * File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_014_check_done_jobs (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 188, in test_014_check_done_jobs from ..api import connect, get_job_types File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_015_check_cc_files (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 195, in test_015_check_cc_files from ..api import connect, get_filters, get_station_pairs, \ File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_016_update_config (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 214, in test_016_update_config from ..api import connect, update_config File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_017_reset_cc_jobs (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 220, in test_017_reset_cc_jobs from ..api import connect, reset_jobs File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_018_recompute_cc (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 226, in test_018_recompute_cc self.test_013_s03compute_cc() File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 180, in test_013_s03compute_cc from ..s03compute_cc import main File "/usr/local/lib/python2.7/dist-packages/msnoise/s03compute_cc.py", line 163, in <module> from .api import * File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_019_check_SACS (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 229, in test_019_check_SACS self.test_015_check_cc_files(format='SAC') File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 195, in test_015_check_cc_files from ..api import connect, get_filters, get_station_pairs, \ File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_020_update_config (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 232, in test_020_update_config from ..api import connect, update_config File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_021_reprocess_BOTH (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 240, in test_021_reprocess_BOTH self.test_017_reset_cc_jobs() File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 220, in test_017_reset_cc_jobs from ..api import connect, reset_jobs File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_022_check_content (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 248, in test_022_check_content from ..api import connect, get_filters, get_station_pairs, \ File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_023_stack (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 274, in test_023_stack from ..api import connect, update_config File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_024_mwcs (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 288, in test_024_mwcs from ..s05compute_mwcs import main File "/usr/local/lib/python2.7/dist-packages/msnoise/s05compute_mwcs.py", line 71, in <module> from .api import * File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_025_dtt (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 292, in test_025_dtt from ..s06compute_dtt import main File "/usr/local/lib/python2.7/dist-packages/msnoise/s06compute_dtt.py", line 128, in <module> from .api import * File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_026_build_ref_datelist (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 296, in test_026_build_ref_datelist from ..api import connect, build_ref_datelist File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_027_build_movstack_datelist (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 305, in test_027_build_movstack_datelist from ..api import connect, build_movstack_datelist File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_028_stretching (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 314, in test_028_stretching from ..api import connect, update_config, reset_jobs File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_029_create_fake_new_files (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 332, in test_029_create_fake_new_files from ..s01scan_archive import main File "/usr/local/lib/python2.7/dist-packages/msnoise/s01scan_archive.py", line 56, in <module> from .api import * File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ====================================================================== ERROR: test_030_instrument_response (msnoise.test.tests.MSNoiseTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line 348, in test_030_instrument_response from ..api import connect, update_config File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in <module> from scipy.fftpack.helper import next_fast_len ImportError: cannot import name next_fast_len ---------------------------------------------------------------------- Ran 32 tests in 1.399s FAILED (errors=31) -- *Verónica Montenegro* Laboratorio de Seguimiento y estudio de volcanes activos (LESVA) UNRN- CONICET Av. Roca 1242, General Roca (8332), Argentina -- *Verónica Montenegro* Laboratorio de Seguimiento y estudio de volcanes activos (LESVA) UNRN- CONICET Av. Roca 1242, General Roca (8332), Argentina

7 years, 2 months

calculate autocorrs after the fact

by Flinders, Ashton

I have a 5 station project, where I've already done the normal C2 crosscorrelations. But now I'm interested in what the autocorrs look like. Is there a way to have it reprocess the data, but just the autocorrs? I tried changing the auto-corr flag in the config to Y (from N), and the did the standard work flow (scan, new-jobs, etc). But it didnt calculate them. Do I need to reset CC --all? Thanks! ashton -- Ashton F. Flinders, Ph.D U.S. Geological Survey 345 Middlefield Road Menlo Park, CA 94025 (650) 329-5050

7 years, 2 months

Re: [MSNoise] < 1 day moving stacks

by Thomas Lecocq

Dear Ashton, Possible: yes... Built-in MSNoise: not yet.... But I will also need it for this project: http://seismologie.be/large-mem/index.html so it's going to be included soon. Let me know if you need help on "hacking" that in the meantime, I'd say the best would be to use jupyter notebooks & the msnoise.api Cheers Thomas Le 16/05/2018 à 02:05, Flinders, Ashton a écrit : > Is it possible to do moving stacks of less than 1 day? I'm looking at > trying to see if there are correlations from surface processes on the > order of hours, to velocity changes. > > thanks! > -a > > -- > Ashton F. Flinders, Ph.D > U.S. Geological Survey > 345 Middlefield Road > Menlo Park, CA 94025 > (650) 329-5050 >

7 years, 5 months

(no subject)

by 席超?

Dear Thomas， Is there any method in “MSnoise” package to remove the average value and linear trend of seismic signal? Best regards, Xi Chaoqiang

7 years, 5 months

two channel types one station

by Flinders, Ashton

I have scanned a database of three stations. One of those stations has two instrument types, HN* and HH*. I wanted to try and use both the seismometer data and the accelerometer data. In my station table I have that station twice, once with the instrument type "HN*" and again with the instrument type "HH*" When calculating the CC, I get an error related to to this section of api.py (1430-1441); if len(st) == 2: mask = np.logical_or(st[0].data.mask, st[1].data.mask) elif len(st) == 3: mask = np.logical_or(st[0].data.mask, st[1].data.mask, st[2].data.mask) # apply the mask to all traces for tr in st: tr.data.mask = mask # remove the masks from the stream st = st.split() return st The error is because st = 4, (HHN, HHE, HNN, HNE). To try and work around, it seems like I can not just tell it in the station conf to not use the HN* station - it still tries to and fails. (1) am I doing something wrong here in general (2) how do I reset the scan archive if I remove this instrument, or do I just have to delete the database and start over?? -thanks -- Ashton F. Flinders, Ph.D U.S. Geological Survey 345 Middlefield Road Menlo Park, CA 94025 (650) 329-5050

7 years, 5 months

Single Station Correlation Issue

by Sergio Morales Méndez

Help! I have 1-station with 3 components following this structure: VERA/HHZ.D/files VERA/HHN.D/files VERA/HHE.D/files and the files have the correct name for the SDS structure, but when i want to make the "ZN, ZE, NE" correlation, i can't get new jobs! only if i want to do AC the software get the jobs for the ZZ correlation. =( -- —— ——— Sergio Morales Méndez Coordinador Área Sismología - Observatorio Volcanológico de los Andes del Sur (Ovdas) www.sernageomin.cl Servicio Nacional de Geología y Minería (56)45 2270701 - Anexo 3328 - @profesergiom Avenida Rudecindo Ortega 03850, Temuco, Chile

7 years, 5 months

instrument code

by Flinders, Ashton

in msnoise admin, configuration > station, what is the correct format for the "instrument" field, and where should I take this from. my responses are not being removed and I have tried using obspy inv, resp files, XMLs and pazs. apologies for the rudimentary question. -a -- Ashton F. Flinders, Ph.D U.S. Geological Survey 345 Middlefield Road Menlo Park, CA 94025 (650) 329-5050

7 years, 5 months

"Key 'da_index' doesn't exist in table 'data_availability'"

by Flinders, Ashton

[DEBUG] ERROR: (pymysql.err.InternalError) (1176, "Key 'da_index' doesn't exist in table 'data_availability'") [SQL: 'SELECT data_availability.ref AS data_availability_ref, data_availability.net AS data_availability_net, data_availability.sta AS data_availability_sta, data_availability.comp AS data_availability_comp, data_availability.path AS data_availability_path, data_availability.file AS data_availability_file, data_availability.starttime AS data_availability_starttime, data_availability.endtime AS data_availability_endtime, data_availability.data_duration AS data_availability_data_duration, data_availability.gaps_duration AS Any idea? -- Ashton F. Flinders, Ph.D U.S. Geological Survey 345 Middlefield Road Menlo Park, CA 94025 (650) 329-5050

7 years, 5 months

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