Hello there,
I'm installing Msnoise 1.5.1 on a computer with Debian. I'm not using
Anaconda, but I've installed the necessary packages with pip and the
package repository. My problem is that when I run the bug report it seems
that everything is correct, but when I run msnoise test I have many errors
and I don't know how to fix them. I attached the bugreport and the test
results.
I hope you can help me,
Cheers,
************* Computer Report *************
----------------+SYSTEM+-------------------
Linux
debian-vero
3.16.0-5-amd64
#1 SMP Debian 3.16.51-3+deb8u1 (2018-01-08)
x86_64
debian - 8.10 -
----------------+PYTHON+-------------------
Python:2.7.9 (default, Jun 29 2016, 13:08:31)
[GCC 4.9.2]
This script is at /usr/local/lib/python2.7/dist-
packages/msnoise/bugreport.pyc
---------------+MODULES+-------------------
Required:
[X] setuptools: 39.0.1
[X] numpy: 1.8.2
[X] scipy: 0.14.0
[X] pandas: 0.14.1
[X] matplotlib: 1.4.2
[X] sqlalchemy: 1.2.10
[X] obspy: 1.1.0
[X] click: 6.6
[X] pymysql: 0.7.6.None
[X] flask: 0.10.1
[X] flask_admin: 1.5.1
[X] markdown: <module 'markdown.__version__' from '/usr/lib/python2.7/dist-
packages/markdown/__version__.pyc'>
[X] wtforms: 2.0.1
[X] folium: 0.6.0
[X] jinja2: 2.7.3
Only necessary if you plan to build the doc locally:
[X] sphinx: 1.7.6
Graphical Backends: (at least one is required)
[ ] wx: not found
[ ] pyqt: not found
[X] PySide: 1.2.2
Not required, just checking:
[X] json: 2.0.9
[ ] psutil: not found
[X] reportlab: $Id$
[ ] configobj: not found
[X] pkg_resources: present (no version)
[X] paramiko: 1.15.1
[X] ctypes: 1.1.0
[X] pyparsing: 2.2.0
[X] distutils: 2.7.9
[X] IPython: 5.8.0
[ ] vtk: not found
[ ] enable: not found
[ ] traitsui: not found
[ ] traits: not found
[ ] scikits.samplerate: not found
test_001_S01installer (msnoise.test.tests.MSNoiseTests) ... ERROR
test_002_ConnectToDB (msnoise.test.tests.MSNoiseTests) ... ERROR
test_003_set_and_config (msnoise.test.tests.MSNoiseTests) ... ERROR
test_004_set_and_get_filters (msnoise.test.tests.MSNoiseTests) ... ERROR
test_005_populate_station_table (msnoise.test.tests.MSNoiseTests) ... ERROR
test_006_get_stations (msnoise.test.tests.MSNoiseTests) ... ERROR
test_007_update_stations (msnoise.test.tests.MSNoiseTests) ... ERROR
test_008_scan_archive (msnoise.test.tests.MSNoiseTests) ... ERROR
test_009_control_data_availability (msnoise.test.tests.MSNoiseTests) ...
ERROR
test_010_new_jobs (msnoise.test.tests.MSNoiseTests) ... ERROR
test_011_control_jobs (msnoise.test.tests.MSNoiseTests) ... ERROR
test_012_reset_jobs (msnoise.test.tests.MSNoiseTests) ... ERROR
test_012b_hack_noresample (msnoise.test.tests.MSNoiseTests) ... ERROR
test_013_s03compute_cc (msnoise.test.tests.MSNoiseTests) ... ERROR
test_014_check_done_jobs (msnoise.test.tests.MSNoiseTests) ... ERROR
test_015_check_cc_files (msnoise.test.tests.MSNoiseTests) ... ERROR
test_016_update_config (msnoise.test.tests.MSNoiseTests) ... ERROR
test_017_reset_cc_jobs (msnoise.test.tests.MSNoiseTests) ... ERROR
test_018_recompute_cc (msnoise.test.tests.MSNoiseTests) ... ERROR
test_019_check_SACS (msnoise.test.tests.MSNoiseTests) ... ERROR
test_020_update_config (msnoise.test.tests.MSNoiseTests) ... ERROR
test_021_reprocess_BOTH (msnoise.test.tests.MSNoiseTests) ... ERROR
test_022_check_content (msnoise.test.tests.MSNoiseTests) ... ERROR
test_023_stack (msnoise.test.tests.MSNoiseTests) ... ERROR
test_024_mwcs (msnoise.test.tests.MSNoiseTests) ... ERROR
test_025_dtt (msnoise.test.tests.MSNoiseTests) ... ERROR
test_026_build_ref_datelist (msnoise.test.tests.MSNoiseTests) ... ERROR
test_027_build_movstack_datelist (msnoise.test.tests.MSNoiseTests) ... ERROR
test_028_stretching (msnoise.test.tests.MSNoiseTests) ... ERROR
test_029_create_fake_new_files (msnoise.test.tests.MSNoiseTests) ... ERROR
test_030_instrument_response (msnoise.test.tests.MSNoiseTests) ... ERROR
test_099_S01installer (msnoise.test.tests.MSNoiseTests) ... Seems to be
running on local machine, skipping MySQL test
ok
======================================================================
ERROR: test_001_S01installer (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
19, in test_001_S01installer
from ..s000installer import main
File "/usr/local/lib/python2.7/dist-packages/msnoise/s000installer.py",
line 41, in <module>
from .api import create_database_inifile
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_002_ConnectToDB (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
29, in test_002_ConnectToDB
from ..api import connect
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_003_set_and_config (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
37, in test_003_set_and_config
from ..api import connect, get_config, update_config
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_004_set_and_get_filters (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
54, in test_004_set_and_get_filters
from ..api import connect, update_filter, get_filters
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_005_populate_station_table (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
90, in test_005_populate_station_table
from ..s002populate_station_table import main
File "/usr/local/lib/python2.7/dist-packages/msnoise/
s002populate_station_table.py", line 81, in <module>
from .api import *
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_006_get_stations (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
98, in test_006_get_stations
from ..api import connect, get_stations
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_007_update_stations (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
105, in test_007_update_stations
from ..api import connect, get_stations, update_station
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_008_scan_archive (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
126, in test_008_scan_archive
from ..s01scan_archive import main
File "/usr/local/lib/python2.7/dist-packages/msnoise/s01scan_archive.py",
line 56, in <module>
from .api import *
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_009_control_data_availability (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
134, in test_009_control_data_availability
from ..api import connect, get_new_files, get_data_availability,\
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_010_new_jobs (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
150, in test_010_new_jobs
from ..s02new_jobs import main
File "/usr/local/lib/python2.7/dist-packages/msnoise/s02new_jobs.py",
line 18, in <module>
from .api import *
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_011_control_jobs (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
159, in test_011_control_jobs
from ..api import connect, is_next_job, get_next_job
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_012_reset_jobs (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
168, in test_012_reset_jobs
from ..api import connect, reset_jobs
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_012b_hack_noresample (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
174, in test_012b_hack_noresample
from ..api import connect, update_config
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_013_s03compute_cc (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
180, in test_013_s03compute_cc
from ..s03compute_cc import main
File "/usr/local/lib/python2.7/dist-packages/msnoise/s03compute_cc.py",
line 163, in <module>
from .api import *
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_014_check_done_jobs (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
188, in test_014_check_done_jobs
from ..api import connect, get_job_types
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_015_check_cc_files (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
195, in test_015_check_cc_files
from ..api import connect, get_filters, get_station_pairs, \
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_016_update_config (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
214, in test_016_update_config
from ..api import connect, update_config
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_017_reset_cc_jobs (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
220, in test_017_reset_cc_jobs
from ..api import connect, reset_jobs
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_018_recompute_cc (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
226, in test_018_recompute_cc
self.test_013_s03compute_cc()
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
180, in test_013_s03compute_cc
from ..s03compute_cc import main
File "/usr/local/lib/python2.7/dist-packages/msnoise/s03compute_cc.py",
line 163, in <module>
from .api import *
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_019_check_SACS (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
229, in test_019_check_SACS
self.test_015_check_cc_files(format='SAC')
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
195, in test_015_check_cc_files
from ..api import connect, get_filters, get_station_pairs, \
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_020_update_config (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
232, in test_020_update_config
from ..api import connect, update_config
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_021_reprocess_BOTH (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
240, in test_021_reprocess_BOTH
self.test_017_reset_cc_jobs()
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
220, in test_017_reset_cc_jobs
from ..api import connect, reset_jobs
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_022_check_content (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
248, in test_022_check_content
from ..api import connect, get_filters, get_station_pairs, \
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_023_stack (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
274, in test_023_stack
from ..api import connect, update_config
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_024_mwcs (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
288, in test_024_mwcs
from ..s05compute_mwcs import main
File "/usr/local/lib/python2.7/dist-packages/msnoise/s05compute_mwcs.py",
line 71, in <module>
from .api import *
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_025_dtt (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
292, in test_025_dtt
from ..s06compute_dtt import main
File "/usr/local/lib/python2.7/dist-packages/msnoise/s06compute_dtt.py",
line 128, in <module>
from .api import *
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_026_build_ref_datelist (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
296, in test_026_build_ref_datelist
from ..api import connect, build_ref_datelist
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_027_build_movstack_datelist (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
305, in test_027_build_movstack_datelist
from ..api import connect, build_movstack_datelist
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_028_stretching (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
314, in test_028_stretching
from ..api import connect, update_config, reset_jobs
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_029_create_fake_new_files (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
332, in test_029_create_fake_new_files
from ..s01scan_archive import main
File "/usr/local/lib/python2.7/dist-packages/msnoise/s01scan_archive.py",
line 56, in <module>
from .api import *
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
======================================================================
ERROR: test_030_instrument_response (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/msnoise/test/tests.py", line
348, in test_030_instrument_response
from ..api import connect, update_config
File "/usr/local/lib/python2.7/dist-packages/msnoise/api.py", line 22, in
<module>
from scipy.fftpack.helper import next_fast_len
ImportError: cannot import name next_fast_len
----------------------------------------------------------------------
Ran 32 tests in 1.399s
FAILED (errors=31)
--
*Verónica Montenegro*
Laboratorio de Seguimiento y estudio de volcanes activos (LESVA)
UNRN- CONICET
Av. Roca 1242, General Roca (8332), Argentina
--
*Verónica Montenegro*
Laboratorio de Seguimiento y estudio de volcanes activos (LESVA)
UNRN- CONICET
Av. Roca 1242, General Roca (8332), Argentina
I have a 5 station project, where I've already done the normal C2
crosscorrelations. But now I'm interested in what the autocorrs look like.
Is there a way to have it reprocess the data, but just the autocorrs?
I tried changing the auto-corr flag in the config to Y (from N), and the
did the standard work flow (scan, new-jobs, etc). But it didnt calculate
them.
Do I need to reset CC --all?
Thanks!
ashton
--
Ashton F. Flinders, Ph.D
U.S. Geological Survey
345 Middlefield Road
Menlo Park, CA 94025
(650) 329-5050
