Hi Emily,
Well, it should not kill the process, so this is definitively a bug. If
you have a github account, please open an Issue describing the problem
and, if possible, add the files (even incomplete files) for the two
stations for 2011-09-06 in a zip somewhere, so I can reproduce the issue.
Thanks a lot,
Thomas
On 06/09/2017 18:49, Crowder, Emily wrote:
>
> Sorry for the multiple messages.
>
> I have realised why the compute_cc is stopping. It is because I am
> trying to compute TT, using BHN and BHE, and for some days, there is a
> BHE and not a BHN data file. I think the problem is the code is not
> skipping the days where there isn't enough data to compute a CC.
> Instead, it is just stopping the process entirely.
>
> Hope this helps.
>
>
> Emily
>
>
> ~~~~~~~~~~~~~~~~~~~~~~~~~
>
> *Emily Crowder **MSc BSc*
> PhD Student
> School of Geosciences
> University of Aberdeen
> Aberdeen AB24 3UE
> Scotland
> Em: emily.crowder(a)abdn.ac.uk
>
> ~~~~~~~~~~~~~~~~~~~~~~~~~
>
>
>
> ------------------------------------------------------------------------
> *From:* Crowder, Emily
> *Sent:* 06 September 2017 17:22
> *To:* Thomas Lecocq
> *Subject:* MSNoise compute_cc error
>
> Hi Thomas,
>
>
> I fixed my web interface error, I had not installed entirely
> everything on the required items list. Unfortunately I now have a new
> problem whilst computing cross-correlations. CCs are computed
> successfully for a few jobs before the error occurs and the process
> stops. I have copied the output below. Is it a problem with my data?
> Or one of the variables in config?
>
> I really appreciate your help with all things MSNoise related.
>
>
> Best,
>
> Emily
>
>
> 2017-09-06 16:49:57 [INFO] New CC Job: 2011-09-06 (1 pairs with 2
> stations)
>
> 2017-09-06 16:49:57 [DEBUG] BA.BA04.E Reading 2 Files
>
> 2017-09-06 16:49:57 [DEBUG] Checking sample alignment
>
> 2017-09-06 16:49:57 [DEBUG] Checking Gaps
>
> 2017-09-06 16:49:57 [DEBUG] BA.BA04.E Highpass at 0.03 Hz
>
> 2017-09-06 16:49:57 [DEBUG] BA.BA04.N Reading 2 Files
>
> 2017-09-06 16:49:57 [DEBUG] Checking sample alignment
>
> 2017-09-06 16:49:57 [DEBUG] Checking Gaps
>
> 2017-09-06 16:49:57 [DEBUG] BA.BA04.N Highpass at 0.03 Hz
>
> 2017-09-06 16:49:57 [DEBUG] BA.BA06.E Reading 2 Files
>
> 2017-09-06 16:49:57 [DEBUG] Checking sample alignment
>
> 2017-09-06 16:49:57 [DEBUG] Checking Gaps
>
> 2017-09-06 16:49:57 [DEBUG] BA.BA06.E Highpass at 0.03 Hz
>
> 2017-09-06 16:49:57 [DEBUG] BA.BA06.N Reading 1 Files
>
> 2017-09-06 16:49:57 [DEBUG] Checking sample alignment
>
> 2017-09-06 16:49:57 [DEBUG] Checking Gaps
>
> 2017-09-06 16:49:57 [DEBUG] has only too small traces, skipping...
>
> 2017-09-06 16:49:57 [INFO] Processing pair: BA.BA04 vs BA.BA06
>
> 2017-09-06 16:49:57 [INFO] Azimuth=75.6
>
> 2017-09-06 16:49:57 [DEBUG] Processing TT
>
> 2017-09-06 16:49:57 [DEBUG] Rotating streams, making sure they are aligned
>
> Process Process-1:
>
> Traceback (most recent call last):
>
> File
> "/Users/r01ec15/anaconda/lib/python2.7/multiprocessing/process.py",
> line 258, in _bootstrap
>
> self.run()
>
> File
> "/Users/r01ec15/anaconda/lib/python2.7/multiprocessing/process.py",
> line 114, in run
>
> self._target(*self._args, **self._kwargs)
>
> File
> "/Users/r01ec15/anaconda/lib/python2.7/site-packages/msnoise/s03compute_cc.py",
> line 318, in main
>
> t2_novert = make_same_length(t2_novert)
>
> File
> "/Users/r01ec15/anaconda/lib/python2.7/site-packages/msnoise/api.py",
> line 1433, in make_same_length
>
> tr.data.mask = mask
>
> UnboundLocalError: local variable 'mask' referenced before assignment
>
>
> ~~~~~~~~~~~~~~~~~~~~~~~~~
>
> *Emily Crowder **MSc BSc*
> PhD Student
> School of Geosciences
> University of Aberdeen
> Aberdeen AB24 3UE
> Scotland
> Em: emily.crowder(a)abdn.ac.uk
>
> ~~~~~~~~~~~~~~~~~~~~~~~~~
>
>
>
> The University of Aberdeen is a charity registered in Scotland, No
> SC013683.
> Tha Oilthigh Obar Dheathain na charthannas clàraichte ann an Alba,
> Àir. SC013683.
--
Dr. Thomas Lecocq
Geologist - Seismologist
Seismology - Gravimetry
Royal Observatory of Belgium
*
* * * * *
* * * *
---------
http://www.seismology.behttp://msnoise.orghttp://twitter.com/#!/Seismologie_behttps://www.facebook.com/seismologie.be
Hello,
I have just installed and setup MSNoise (and MySQL and MySQL Workbench) on my new Mac. I have successfully done scan_archive but my problem is that when I try to use the web interface to view "Data Availability" I get the following error message:
"Internal Server Error - The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application."
In the terminal, the message is:
"InternalError: (pymysql.err.InternalError) (1412, u'Table definition has changed, please retry transaction') [SQL: u'SELECT count(%(count_2)s) AS count_1 \nFROM data_availability'] [parameters: {u'count_2': '*'}]
2017-09-06 12:36:04 [INFO] 127.0.0.1 - - [06/Sep/2017 12:36:04] "GET /admin/data_availability/ HTTP/1.1" 500 -"
Is there something I have done in MySQL Workbench? Any ideas on how I can view Data Availability and Jobs? Everything else appears to be working, I have all my data in the MySQL database.
Kind regards,
Emily
~~~~~~~~~~~~~~~~~~~~~~~~~
Emily Crowder MSc BSc
PhD Student
School of Geosciences
University of Aberdeen
Aberdeen AB24 3UE
Scotland
Em: emily.crowder(a)abdn.ac.uk
~~~~~~~~~~~~~~~~~~~~~~~~~
The University of Aberdeen is a charity registered in Scotland, No SC013683.
Tha Oilthigh Obar Dheathain na charthannas clàraichte ann an Alba, Àir. SC013683.
